Factsheet for GSMUA_Achr9P28140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	34.32	35.45
GSMUA_Achr5P05220_001	Banana	mitochondrion	34.53	33.61
GSMUA_Achr3P06000_001	Banana	plastid	36.23	32.95
GSMUA_Achr9P14450_001	Banana	plastid	32.2	32.69
GSMUA_Achr7P19940_001	Banana	plastid	36.02	32.14
Bra018108.1-P	Field mustard	cytosol	20.55	29.75
Solyc02g087200.1.1	Tomato	mitochondrion	30.3	29.73
PGSC0003DMT400001437	Potato	mitochondrion	30.51	29.63
CDY69575	Canola	cytosol	29.03	28.07
KRH54443	Soybean	cytosol, mitochondrion	30.51	27.8
CDY24151	Canola	cytosol	27.54	27.48
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	30.3	27.34
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	30.93	26.84
CDY36926	Canola	cytosol	29.03	26.65
KRH63473	Soybean	cytosol, plastid	29.24	26.29
CDY44594	Canola	cytosol, plastid	30.51	26.23
CDY30728	Canola	cytosol	27.97	25.88
CDY53109	Canola	cytosol, plastid	30.08	25.63
Bra025605.1-P	Field mustard	cytosol, plastid	30.51	25.62
Bra031875.1-P	Field mustard	mitochondrion	29.45	25.46
AT5G40140.1	Thale cress	plastid	29.66	25.45
AT3G47820.1	Thale cress	cytosol	28.39	25.24
CDY37807	Canola	mitochondrion	29.24	25.18
KRG93403	Soybean	cytosol	30.08	25.0
CDY33979	Canola	mitochondrion	29.24	24.95
Bra029250.1-P	Field mustard	cytosol	28.81	24.64
AT5G62560.1	Thale cress	cytosol	28.6	24.15
Solyc03g113870.1.1	Tomato	cytosol	26.91	24.05
CDY16770	Canola	cytosol, mitochondrion	28.39	24.01
Bra035890.1-P	Field mustard	mitochondrion, plastid	28.39	23.97
CDX87251	Canola	mitochondrion	27.97	23.45
KRH18582	Soybean	cytosol	30.08	23.39
PGSC0003DMT400062863	Potato	cytosol	26.48	23.36
AT5G65200.1	Thale cress	cytosol, mitochondrion	27.12	23.02

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr9G28140_001	EnsemblPlants:GSMUA_Achr9P28140_001	EnsemblPlants:GSMUA_Achr9T28140_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0U471	PFAM:PF00514	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296227B	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G28140_001]

Coordinates

chr9:-:32231175..32233819

Molecular Weight (calculated)

50592.5 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.064

Length

472 amino acids

Sequence
(BLAST)

001: MADPVVVAAT GWTFERRCVE ACADLGVAPP DLSLDRPFSS SSSSTSPLVL IPNIILKSAI HDWCDRHGLP RPLPVPADAA CAFASALSDG TNKEEDDIVR
101: SKSSGLDCNS EETTSPGVRL SSVSQTEDKC FSFSLPSTSS PSLHHTSSSS SSEIEVLPPP NVVSPASEIE TDAWEEEMLT KWMDSDVKEQ EFAAASLRHA
201: TRESRDCRIK LCSPHLLASL RSILLTRCTA VQINAVAAMV NLSLEKENKV RIVRCGAVLP LVEVLKGGHP EAREHAAAAL HSLALDGENR VAIGSLGAIP
301: PLLNLFTSPS AAGPRARRDA GKALCHLSVA RPNQPKIART AGAVRALLAV AEAEAPFIQE GPQILPLLFD NKICCHSMLN IISHINVSCR LNTATREASI
401: QCSNQVTKGI PCTGSDKDTA MIDGIIERWI LPHHNFTILA ILSSKSHKQE LAMSTAGTKE MAHHCTRTIT KI

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.