Factsheet for Solyc03g113870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062863	Potato	cytosol	86.17	85.05
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	52.08	52.58
Solyc02g087200.1.1	Tomato	mitochondrion	46.4	50.94
KRH63473	Soybean	cytosol, plastid	50.0	50.29
KRH54443	Soybean	cytosol, mitochondrion	48.3	49.23
AT5G65200.1	Thale cress	cytosol, mitochondrion	48.11	45.68
CDY33979	Canola	mitochondrion	47.73	45.57
CDY24151	Canola	cytosol	40.53	45.24
Bra031875.1-P	Field mustard	mitochondrion	46.78	45.24
Bra018108.1-P	Field mustard	cytosol	27.84	45.09
CDY37807	Canola	mitochondrion	46.78	45.07
CDY30728	Canola	cytosol	42.23	43.73
CDY69575	Canola	cytosol	39.77	43.03
CDY36926	Canola	cytosol	41.29	42.41
CDX87251	Canola	mitochondrion	44.32	41.56
AT5G62560.1	Thale cress	cytosol	43.94	41.5
Bra029250.1-P	Field mustard	cytosol	43.37	41.49
CDY16770	Canola	cytosol, mitochondrion	43.56	41.22
AT3G47820.1	Thale cress	cytosol	41.1	40.87
Bra035890.1-P	Field mustard	mitochondrion, plastid	42.99	40.61
GSMUA_Achr10P...	Banana	cytosol	29.17	33.7
GSMUA_Achr9P14450_001	Banana	plastid	29.17	33.12
GSMUA_Achr5P05220_001	Banana	mitochondrion	30.11	32.78
Zm00001d044773_P001	Maize	cytosol	28.6	32.75
HORVU7Hr1G039760.2	Barley	mitochondrion	32.39	32.63
TraesCS7A01G194900.1	Wheat	mitochondrion	31.82	32.56
TraesCS7B01G100600.1	Wheat	mitochondrion	32.01	32.5
HORVU6Hr1G043090.2	Barley	cytosol	22.35	32.42
TraesCS7D01G196500.1	Wheat	mitochondrion	31.63	32.36
GSMUA_Achr3P06000_001	Banana	plastid	31.44	31.98
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.42	31.79
Os06t0238000-00	Rice	plasma membrane	31.06	31.66
GSMUA_Achr7P19940_001	Banana	plastid	30.87	30.81
Zm00001d005699_P001	Maize	mitochondrion	31.06	30.77
Zm00001d020358_P001	Maize	mitochondrion	32.58	30.66
Os06t0238200-00	Rice	plasma membrane	28.41	30.55
KXG19688	Sorghum	plastid	31.06	30.48
HORVU4Hr1G008170.1	Barley	cytosol	10.61	30.43
HORVU4Hr1G082630.1	Barley	plastid	7.95	30.0
Os09t0386200-01	Rice	plasma membrane	31.06	29.98
TraesCS5A01G201400.1	Wheat	mitochondrion	31.44	29.91
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	31.25	29.73
OQU89450	Sorghum	mitochondrion	32.95	29.64
TraesCS5D01G207500.1	Wheat	mitochondrion	31.25	29.36
HORVU7Hr1G046920.1	Barley	mitochondrion	29.92	29.26
TraesCS7B01G194100.1	Wheat	mitochondrion	29.92	29.21
TraesCS5B01G200100.1	Wheat	mitochondrion	31.06	29.18
TraesCS7D01G229000.1	Wheat	mitochondrion	29.55	29.0
TraesCS7A01G225500.1	Wheat	mitochondrion	29.55	28.89
HORVU6Hr1G091220.1	Barley	plastid	10.23	27.98
OQU80448	Sorghum	mitochondrion	29.36	27.05
GSMUA_Achr9P28140_001	Banana	cytosol	24.05	26.91
Zm00001d032264_P001	Maize	mitochondrion	28.98	26.7
EER92069	Sorghum	cytosol	28.79	26.43
Os08t0421850-00	Rice	mitochondrion	28.41	25.64
HORVU6Hr1G008010.2	Barley	plastid	7.77	21.81

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BKN9	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc03g113870.1	EnsemblPlants:Solyc03g113870.1.1	UniParc:UPI0002767FD8	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BKN9]

Coordinates

chr3:+:63927887..63929473

Molecular Weight (calculated)

57814.8 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.270

Length

528 amino acids

Sequence
(BLAST)

001: MYSPFRKANG DTGRHGRSKS VWNIFVYRSS SKFDKRDPPK ELICPIYGCL MFDPVVVSTG QSFERTSVQV CKDLGFKPQL PDGLNPDFTN VIPNLALRTT
101: ILTWCEKSGA EKPQQPDYYV VESVVRASMA STSSSSISRE DSSIRVSERD LFKGGTENSP MLLSQAASEM KSRDSHFYSS SSSEESVIAN NSPLLPFKTR
201: LSSYSSSSSQ STSSEIVSGE VPSSASTSSV DDYYVVQFKK SDVYEQEQAV ISLRKSTRTD EEARVSLCTP RLLSALKPLL LSRYAGVQPN AVAALVNLSL
301: ADINKVKIVR AGMTSMLIDL LKSGSEETKE HAAGAIFSLA LEDDNKTAIG VLGALQPLLH ALRSETERTR HDSALALYHL TLVQSNRVKL IKLGAANTLL
401: GLLKASDMAG KVMLVLCNLA VSEEGKSALL DANAVDVLLG ILRNSNKLDD STRENCVGAL YSLSQKSLRF KSMAKEAKAG EVLQVVVERG SERAREKAKK
501: MLIAMQTRVK EEYEDEEEEV NWEGILEG

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.