Factsheet for AT3G47820.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018108.1-P	Field mustard	cytosol	54.05	88.04
CDY24151	Canola	cytosol	75.89	85.2
CDY36926	Canola	cytosol	74.95	77.43
AT5G62560.1	Thale cress	cytosol	68.74	65.3
AT5G65200.1	Thale cress	cytosol, mitochondrion	52.17	49.82
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	48.59	49.33
KRH54443	Soybean	cytosol, mitochondrion	48.02	49.23
KRH63473	Soybean	cytosol, plastid	48.4	48.95
Solyc03g113870.1.1	Tomato	cytosol	40.87	41.1
PGSC0003DMT400062863	Potato	cytosol	40.49	40.19
AT5G40140.1	Thale cress	plastid	41.62	40.18
GSMUA_Achr10P...	Banana	cytosol	31.07	36.1
Zm00001d044773_P001	Maize	cytosol	30.51	35.14
GSMUA_Achr9P14450_001	Banana	plastid	30.7	35.05
GSMUA_Achr3P06000_001	Banana	plastid	34.09	34.87
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.83	34.85
TraesCS7D01G196500.1	Wheat	mitochondrion	33.71	34.69
TraesCS7B01G100600.1	Wheat	mitochondrion	33.71	34.42
TraesCS7A01G194900.1	Wheat	mitochondrion	33.33	34.3
Os06t0238000-00	Rice	plasma membrane	33.33	34.17
HORVU7Hr1G039760.2	Barley	mitochondrion	33.52	33.97
GSMUA_Achr7P19940_001	Banana	plastid	33.52	33.65
HORVU4Hr1G008170.1	Barley	cytosol	11.49	33.15
Os06t0238200-00	Rice	plasma membrane	30.13	32.59
KXG19688	Sorghum	plastid	32.96	32.53
Zm00001d005699_P001	Maize	mitochondrion	32.39	32.27
HORVU6Hr1G043090.2	Barley	cytosol	21.66	31.59
Zm00001d020358_P001	Maize	mitochondrion	33.33	31.55
TraesCS7D01G229000.1	Wheat	mitochondrion	31.83	31.41
TraesCS5B01G200100.1	Wheat	mitochondrion	32.96	31.14
TraesCS5A01G201400.1	Wheat	mitochondrion	32.39	30.99
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.2	30.81
TraesCS5D01G207500.1	Wheat	mitochondrion	32.58	30.78
TraesCS7B01G194100.1	Wheat	mitochondrion	31.26	30.68
HORVU7Hr1G046920.1	Barley	mitochondrion	30.7	30.19
TraesCS7A01G225500.1	Wheat	mitochondrion	30.51	30.0
HORVU4Hr1G082630.1	Barley	plastid	7.91	30.0
Os09t0386200-01	Rice	plasma membrane	30.7	29.8
Os08t0421850-00	Rice	mitochondrion	32.58	29.57
OQU89450	Sorghum	mitochondrion	32.58	29.47
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.42	28.9
OQU80448	Sorghum	mitochondrion	31.07	28.8
Zm00001d032264_P001	Maize	mitochondrion	30.89	28.62
GSMUA_Achr9P28140_001	Banana	cytosol	25.24	28.39
HORVU6Hr1G091220.1	Barley	plastid	9.23	25.39
EER92069	Sorghum	cytosol	27.31	25.22
HORVU6Hr1G008010.2	Barley	plastid	8.1	22.87

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:823936	UniProt:A0A178V8W3	ProteinID:AEE78334.2
InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT3G47820	EnsemblPlantsGene:AT3G47820	RefSeq:AT3G47820	TAIR:AT3G47820
RefSeq:AT3G47820-TAIR-G	EnsemblPlants:AT3G47820.1	TAIR:AT3G47820.1	EMBL:AY091018	InterPro:Armadillo	EMBL:BT020355
ProteinID:CAB41865.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_190366.2	ProteinID:OAP02677.1
PFAM:PF00514	PFAM:PF04564	PO:PO:0000293	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	Symbol:PUB39	UniProt:Q9STT1	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0007DF4042	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]

Coordinates

chr3:+:17644198..17646268

Molecular Weight (calculated)

57641.7 Da

IEP (calculated)

7.633

GRAVY (calculated)

-0.256

Length

531 amino acids

Sequence
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.