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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
MultiLoc:cytosol
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G082630.1 Barley plastid 61.41 80.71
HORVU6Hr1G008010.2 Barley plastid 52.72 51.6
HORVU6Hr1G091220.1 Barley plastid 53.8 51.3
HORVU6Hr1G043090.2 Barley cytosol 70.11 35.44
HORVU5Hr1G059910.1 Barley mitochondrion, plastid 74.46 24.68
TraesCS5A01G201400.1 Wheat mitochondrion 72.83 24.14
TraesCS5D01G207500.1 Wheat mitochondrion 72.83 23.84
TraesCS5B01G200100.1 Wheat mitochondrion 71.74 23.49
Os09t0386200-01 Rice plasma membrane 63.59 21.39
Zm00001d005699_P001 Maize mitochondrion 59.78 20.64
Zm00001d020358_P001 Maize mitochondrion 61.41 20.14
OQU89450 Sorghum mitochondrion 60.33 18.91
Bra018108.1-P Field mustard cytosol 33.15 18.71
HORVU7Hr1G046920.1 Barley mitochondrion 53.8 18.33
GSMUA_Achr5P05220_001 Banana mitochondrion 45.11 17.11
EER92069 Sorghum cytosol 52.17 16.7
GSMUA_Achr3P06000_001 Banana plastid 45.11 15.99
GSMUA_Achr10P... Banana cytosol 39.13 15.75
GSMUA_Achr9P14450_001 Banana plastid 38.59 15.27
GSMUA_Achr7P19940_001 Banana plastid 43.48 15.12
HORVU7Hr1G039760.2 Barley mitochondrion 42.93 15.08
PGSC0003DMT400001437 Potato mitochondrion 33.15 12.55
Solyc02g087200.1.1 Tomato mitochondrion 32.61 12.47
CDY24151 Canola cytosol 32.07 12.47
CDY69575 Canola cytosol 32.61 12.3
Bra031875.1-P Field mustard mitochondrion 35.33 11.9
CDY36926 Canola cytosol 33.15 11.87
CDY37807 Canola mitochondrion 35.33 11.86
KRH63473 Soybean cytosol, plastid 33.7 11.81
KRH54443 Soybean cytosol, mitochondrion 33.15 11.78
CDY33979 Canola mitochondrion 35.33 11.75
AT5G65200.1 Thale cress cytosol, mitochondrion 35.33 11.69
VIT_17s0000g07730.t01 Wine grape cytosol, plastid 33.15 11.66
AT3G47820.1 Thale cress cytosol 33.15 11.49
VIT_14s0066g01870.t01 Wine grape cytosol, plastid 33.7 11.4
CDY30728 Canola cytosol 31.52 11.37
CDY44594 Canola cytosol, plastid 33.7 11.29
CDY53109 Canola cytosol, plastid 33.7 11.19
Bra025605.1-P Field mustard cytosol, plastid 33.7 11.03
PGSC0003DMT400062863 Potato cytosol 31.52 10.84
CDY16770 Canola cytosol, mitochondrion 32.61 10.75
Bra035890.1-P Field mustard mitochondrion, plastid 32.61 10.73
AT5G62560.1 Thale cress cytosol 32.61 10.73
Bra029250.1-P Field mustard cytosol 32.07 10.69
CDX87251 Canola mitochondrion 32.61 10.66
Solyc03g113870.1.1 Tomato cytosol 30.43 10.61
AT5G40140.1 Thale cress plastid 31.52 10.55
KRG93403 Soybean cytosol 30.98 10.04
KRH18582 Soybean cytosol 30.98 9.39
HORVU7Hr1G108260.3 Barley cytosol, nucleus 3.8 4.05
Protein Annotations
EnsemblPlants:HORVU4Hr1G008170.1EnsemblPlantsGene:HORVU4Hr1G008170Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:ARM-likeInterPro:ARM-type_foldInterPro:ArmadilloInterPro:IPR000225InterPro:IPR011989PANTHER:PTHR23315
PANTHER:PTHR23315:SF79PFscan:PS50176SEG:segSUPFAM:SSF48371UniParc:UPI000B487174UniProt:A0A287N3V5
MapMan:35.2:::::
Description
No Description!
Coordinates
chrchr4H:-:22136832..22138298
Molecular Weight (calculated)
19640.8 Da
IEP (calculated)
11.131
GRAVY (calculated)
0.051
Length
184 amino acids
Sequence
(BLAST)
001: MLFGLALNEE NRVAIGVLGV VPPLLDLLTS PAHHPHARRD AGMAIYHLSL AAVNQSKVTH FPRASKALLS VASSAAEPTP IRRLALMVIC NVGSCSEGRA
101: SVMDAGAVAA VSGILLSSHN VAEQEEWCVA AIYALSRDSL RFRGLARTRP SAAWPRRGPP AASDARWRGR RCAPCGATWT RTRT
Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)
001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF
Arabidopsis Description
PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.