CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30728	Canola	cytosol	88.32	84.51
CDY24151	Canola	cytosol	72.13	74.42
AT5G62560.1	Thale cress	cytosol	82.17	71.74
CDY16770	Canola	cytosol, mitochondrion	80.94	70.79
CDX87251	Canola	mitochondrion	81.15	70.34
CDY36926	Canola	cytosol	69.26	65.76
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	53.48	49.9
KRH54443	Soybean	cytosol, mitochondrion	52.25	49.23
CDY37807	Canola	mitochondrion	55.12	49.09
KRH63473	Soybean	cytosol, plastid	52.05	48.38
CDY33979	Canola	mitochondrion	54.1	47.74
CDY44594	Canola	cytosol, plastid	47.75	42.44
CDY53109	Canola	cytosol, plastid	47.13	41.52
PGSC0003DMT400062863	Potato	cytosol	44.26	40.37
Solyc03g113870.1.1	Tomato	cytosol	43.03	39.77
GSMUA_Achr10P...	Banana	cytosol	35.25	37.64
GSMUA_Achr9P14450_001	Banana	plastid	35.66	37.42
Zm00001d044773_P001	Maize	cytosol	35.04	37.09
TraesCS7B01G100600.1	Wheat	mitochondrion	39.34	36.92
GSMUA_Achr7P19940_001	Banana	plastid	39.34	36.29
HORVU7Hr1G039760.2	Barley	mitochondrion	38.93	36.26
TraesCS7A01G194900.1	Wheat	mitochondrion	38.11	36.05
TraesCS7D01G196500.1	Wheat	mitochondrion	38.11	36.05
GSMUA_Achr5P05220_001	Banana	mitochondrion	35.66	35.88
Os06t0238000-00	Rice	plasma membrane	37.91	35.71
GSMUA_Achr3P06000_001	Banana	plastid	37.5	35.26
Os06t0238200-00	Rice	plasma membrane	34.63	34.42
KXG19688	Sorghum	plastid	37.5	34.01
HORVU6Hr1G043090.2	Barley	cytosol	25.2	33.79
TraesCS5A01G201400.1	Wheat	mitochondrion	38.32	33.69
Zm00001d005699_P001	Maize	mitochondrion	36.27	33.21
Zm00001d020358_P001	Maize	mitochondrion	37.5	32.62
HORVU4Hr1G008170.1	Barley	cytosol	12.3	32.61
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	36.89	32.43
TraesCS5B01G200100.1	Wheat	mitochondrion	37.3	32.38
TraesCS5D01G207500.1	Wheat	mitochondrion	36.68	31.85
Os09t0386200-01	Rice	plasma membrane	35.66	31.81
TraesCS7B01G194100.1	Wheat	mitochondrion	35.25	31.79
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.27	31.79
TraesCS7D01G229000.1	Wheat	mitochondrion	34.84	31.6
TraesCS7A01G225500.1	Wheat	mitochondrion	34.84	31.48
HORVU7Hr1G046920.1	Barley	mitochondrion	34.84	31.48
OQU89450	Sorghum	mitochondrion	36.68	30.49
Zm00001d032264_P001	Maize	mitochondrion	35.45	30.19
HORVU4Hr1G082630.1	Barley	plastid	8.61	30.0
Os08t0421850-00	Rice	mitochondrion	35.86	29.91
OQU80448	Sorghum	mitochondrion	35.04	29.84
GSMUA_Achr9P28140_001	Banana	cytosol	28.07	29.03
EER92069	Sorghum	cytosol	30.74	26.09
HORVU6Hr1G091220.1	Barley	plastid	10.25	25.91
HORVU6Hr1G008010.2	Barley	plastid	9.02	23.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078JT21	UniProt:A0A078JT21	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY69575	ProteinID:CDY69575	ProteinID:CDY69575.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00088881001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE1466	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaCnng64260DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078JT21]

Coordinates

chrLK039751:-:220..1887

Molecular Weight (calculated)

52944.0 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.203

Length

488 amino acids

Sequence
(BLAST)

001: MGGNNRQRWF SFHQRSASAT ATTVPQHKHD ETPPEFLCPI TGFLMSDPVV VPSGQTFERL SVQICRNLGF VPDLLDGTRP DFSAVIPNLA MKSTIFSWCD
101: RKKIDHPRPP DAAYSVTIRQ TPFFPTRAVT MFSSSSTTSS SSGAYAGFDS SSPTSDYSSP SSSPMSPEEE EIYNKLRGAD IFDHEQGLIL LRKMTRSSED
201: LRVSLCTDRI LSFLRQLLVS RYNLVQTNAA ASLVNLSLEK QNKVKIVRSG FVPLLIDVLK SGTTEAQEHV AGALFSLALE DENKMVIGVL GAVEPLLHAL
301: RSSESERARQ DAALALYHLS LIPSNRTRLV RAGAVASLLT MVRSGESTSR ILLVLCNLAA CPDGKGAMLD GNAVAILVGK LREGGEDEAA RENCVAVLLT
401: LCQGNLRFRG LASEAGAEEV LKEVEESGNG RVKEKAGRIL QAMRGGGGES EYGETEAREW NRMIEATGLS RSQFQGGQNG GFACSSQF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.