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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69575 Canola cytosol 71.74 82.17
Bra035890.1-P Field mustard mitochondrion, plastid 80.32 80.32
CDY30728 Canola cytosol 72.99 80.0
Bra029250.1-P Field mustard cytosol 77.46 78.44
CDY16770 Canola cytosol, mitochondrion 77.82 77.96
CDX87251 Canola mitochondrion 78.18 77.62
AT3G47820.1 Thale cress cytosol 65.3 68.74
VIT_17s0000g07730.t01 Wine grape cytosol, plastid 48.84 52.2
KRH54443 Soybean cytosol, mitochondrion 46.51 50.19
KRH63473 Soybean cytosol, plastid 47.05 50.1
AT5G65200.1 Thale cress cytosol, mitochondrion 49.73 50.0
Solyc03g113870.1.1 Tomato cytosol 41.5 43.94
PGSC0003DMT400062863 Potato cytosol 41.14 42.99
AT5G40140.1 Thale cress plastid 40.43 41.09
GSMUA_Achr9P14450_001 Banana plastid 32.74 39.35
GSMUA_Achr10P... Banana cytosol 31.13 38.07
GSMUA_Achr5P05220_001 Banana mitochondrion 31.84 36.7
Zm00001d044773_P001 Maize cytosol 30.23 36.66
GSMUA_Achr7P19940_001 Banana plastid 34.35 36.29
Os06t0238000-00 Rice plasma membrane 33.63 36.29
TraesCS7B01G100600.1 Wheat mitochondrion 33.45 35.96
TraesCS7D01G196500.1 Wheat mitochondrion 32.92 35.66
GSMUA_Achr3P06000_001 Banana plastid 33.09 35.65
TraesCS7A01G194900.1 Wheat mitochondrion 32.56 35.27
HORVU7Hr1G039760.2 Barley mitochondrion 32.74 34.92
HORVU6Hr1G043090.2 Barley cytosol 22.36 34.34
KXG19688 Sorghum plastid 32.92 34.2
Os06t0238200-00 Rice plasma membrane 29.7 33.81
Zm00001d005699_P001 Maize mitochondrion 31.84 33.4
HORVU5Hr1G059910.1 Barley mitochondrion, plastid 32.74 32.97
TraesCS5A01G201400.1 Wheat mitochondrion 32.74 32.97
HORVU4Hr1G008170.1 Barley cytosol 10.73 32.61
TraesCS5B01G200100.1 Wheat mitochondrion 32.74 32.56
Os09t0386200-01 Rice plasma membrane 31.48 32.18
TraesCS7D01G229000.1 Wheat mitochondrion 30.95 32.16
TraesCS7A01G225500.1 Wheat mitochondrion 30.95 32.04
TraesCS5D01G207500.1 Wheat mitochondrion 32.02 31.85
TraesCS7B01G194100.1 Wheat mitochondrion 30.77 31.79
HORVU7Hr1G108260.3 Barley cytosol, nucleus 9.84 31.79
HORVU7Hr1G046920.1 Barley mitochondrion 30.59 31.67
Zm00001d020358_P001 Maize mitochondrion 31.48 31.37
OQU89450 Sorghum mitochondrion 32.74 31.18
Os08t0421850-00 Rice mitochondrion 31.31 29.91
OQU80448 Sorghum mitochondrion 30.41 29.67
HORVU4Hr1G082630.1 Barley plastid 7.33 29.29
Zm00001d032264_P001 Maize mitochondrion 29.87 29.14
GSMUA_Achr9P28140_001 Banana cytosol 24.15 28.6
HORVU6Hr1G091220.1 Barley plastid 9.3 26.94
EER92069 Sorghum cytosol 26.65 25.91
HORVU6Hr1G008010.2 Barley plastid 8.23 24.47
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10EntrezGene:836376ProteinID:AED97622.1EMBL:AK227203
InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT5G62560EnsemblPlantsGene:AT5G62560RefSeq:AT5G62560TAIR:AT5G62560
RefSeq:AT5G62560-TAIR-GEnsemblPlants:AT5G62560.1TAIR:AT5G62560.1EMBL:AY128369InterPro:ArmadilloUnigene:At.29043
ProteinID:BAB11506.1EMBL:BT000351GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_201062.1
PFAM:PF00514PFAM:PF04564PO:PO:0000293PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315
PANTHER:PTHR23315:SF98UniProt:Q0WUF6SMART:SM00185SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850
UniParc:UPI000016291DInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
Coordinates
chr5:+:25109840..25112001
Molecular Weight (calculated)
60467.7 Da
IEP (calculated)
5.548
GRAVY (calculated)
-0.268
Length
559 amino acids
Sequence
(BLAST)
001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.