Factsheet for Zm00001d032264_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80448	Sorghum	mitochondrion	80.28	80.28
TraesCS7A01G225500.1	Wheat	mitochondrion	55.5	58.89
HORVU7Hr1G046920.1	Barley	mitochondrion	54.28	57.59
TraesCS7D01G229000.1	Wheat	mitochondrion	53.58	57.06
TraesCS7B01G194100.1	Wheat	mitochondrion	53.75	56.93
Zm00001d005699_P001	Maize	mitochondrion	47.64	51.22
Os08t0421850-00	Rice	mitochondrion	52.18	51.11
Zm00001d020358_P001	Maize	mitochondrion	45.55	46.52
GSMUA_Achr5P05220_001	Banana	mitochondrion	33.86	40.0
Zm00001d044773_P001	Maize	cytosol	32.11	39.91
GSMUA_Achr10P...	Banana	cytosol	31.24	39.17
GSMUA_Achr3P06000_001	Banana	plastid	34.9	38.54
GSMUA_Achr7P19940_001	Banana	plastid	35.43	38.37
Bra018108.1-P	Field mustard	cytosol	21.64	38.04
GSMUA_Achr9P14450_001	Banana	plastid	28.97	35.7
CDY69575	Canola	cytosol	30.19	35.45
CDY24151	Canola	cytosol	28.97	35.1
CDY30728	Canola	cytosol	30.72	34.51
PGSC0003DMT400001437	Potato	mitochondrion	27.57	32.51
Solyc02g087200.1.1	Tomato	mitochondrion	27.05	32.22
KRH54443	Soybean	cytosol, mitochondrion	28.97	32.05
KRH63473	Soybean	cytosol, plastid	29.32	32.0
Bra029250.1-P	Field mustard	cytosol	30.37	31.52
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	28.62	31.36
CDY36926	Canola	cytosol	27.92	31.13
AT3G47820.1	Thale cress	cytosol	28.62	30.89
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	29.14	30.7
CDY44594	Canola	cytosol, plastid	29.14	30.42
CDY16770	Canola	cytosol, mitochondrion	29.32	30.11
CDY53109	Canola	cytosol, plastid	28.97	29.96
Bra025605.1-P	Field mustard	cytosol, plastid	29.32	29.89
AT5G62560.1	Thale cress	cytosol	29.14	29.87
Bra035890.1-P	Field mustard	mitochondrion, plastid	28.8	29.52
CDX87251	Canola	mitochondrion	28.97	29.48
AT5G65200.1	Thale cress	cytosol, mitochondrion	28.27	29.14
Solyc03g113870.1.1	Tomato	cytosol	26.7	28.98
PGSC0003DMT400062863	Potato	cytosol	27.05	28.97
AT5G40140.1	Thale cress	plastid	27.75	28.91
Bra031875.1-P	Field mustard	mitochondrion	26.53	27.84
CDY37807	Canola	mitochondrion	26.53	27.74
CDY33979	Canola	mitochondrion	26.7	27.67
KRG93403	Soybean	cytosol	26.53	26.76
KRH18582	Soybean	cytosol	26.53	25.04

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6KPJ0	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM04722.1
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF221	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000220EA6B	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d032264
EnsemblPlants:Zm00001d032264_P001	EnsemblPlants:Zm00001d032264_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 40

Coordinates

chr1:+:219659820..219661541

Molecular Weight (calculated)

59104.2 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.086

Length

573 amino acids

Sequence
(BLAST)

001: MGAERSRRWK LLPFRSLSLP PPAASKPKNR PQDVTVPPPR TTKEKGQEEV PADFLCCPIL GTPLADPVIL PSGRTYERAC VLACAELGLS LGPDGVVAGN
101: RDPPGGGVAA AIPNDALRAA VRTWCALADR AAPVAPSGEE AKVAVLRAVA APGTQPPARS SSNLSCSSEG APAPARSASN LSCSSEGASA ASTSSSSSGR
201: SSRDMAPVEV KVVRGKEAAK EEEVEHVRVA DAEEEVVAKA VEAGDETAVE AAMAALRRAT REGAARRRAL CGPRLLASLR RVLLSSRHTA SARADAAAAL
301: ANLSLEPENR VPVVRAGAVP ALIEVLASAA SPAEAREHAA GALFGLALHE GNRAAIGVLG AVPPLLAALA DRDRAPRARL DAGMALYHLS FAAVNQSKLA
401: RAPGASRTLL SVACDAAEPA LVRRLALMVL CNVAACAEGS AALMDAGAVA TASAILSEGA CNTELQECCV EALYAMSRGS PRFRGLARAA GADRPLMLIA
501: EQANAGIDKE VVQTVLRTMG RDNSDDDHTS GCRNDESNYS GSSLPHRRRV ASWSAPPAAT PPSSHQWRSV CID

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.