Factsheet for Zm00001d005699_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020358_P001	Maize	mitochondrion	74.67	70.94
OQU89450	Sorghum	mitochondrion	75.98	68.99
Os09t0386200-01	Rice	plasma membrane	64.92	63.25
HORVU6Hr1G043090.2	Barley	cytosol	43.15	63.19
TraesCS5A01G201400.1	Wheat	mitochondrion	65.67	63.06
TraesCS5D01G207500.1	Wheat	mitochondrion	65.67	62.28
TraesCS5B01G200100.1	Wheat	mitochondrion	65.48	62.1
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	64.54	61.98
HORVU6Hr1G091220.1	Barley	plastid	21.76	60.1
HORVU4Hr1G008170.1	Barley	cytosol	20.64	59.78
HORVU4Hr1G082630.1	Barley	plastid	15.38	58.57
EER92069	Sorghum	cytosol	61.16	56.7
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	17.64	54.34
GSMUA_Achr5P05220_001	Banana	mitochondrion	43.53	47.84
Zm00001d032264_P001	Maize	mitochondrion	51.22	47.64
GSMUA_Achr10P...	Banana	cytosol	40.71	47.48
HORVU6Hr1G008010.2	Barley	plastid	16.7	47.34
Zm00001d044773_P001	Maize	cytosol	40.34	46.64
GSMUA_Achr3P06000_001	Banana	plastid	44.47	45.66
GSMUA_Achr7P19940_001	Banana	plastid	45.03	45.37
GSMUA_Achr9P14450_001	Banana	plastid	39.4	45.16
Bra018108.1-P	Field mustard	cytosol	23.64	38.65
CDY24151	Canola	cytosol	32.46	36.58
CDY69575	Canola	cytosol	33.21	36.27
Solyc02g087200.1.1	Tomato	mitochondrion	32.65	36.17
PGSC0003DMT400001437	Potato	mitochondrion	32.46	35.6
CDY30728	Canola	cytosol	33.77	35.29
KRH63473	Soybean	cytosol, plastid	34.15	34.67
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	33.58	34.23
KRH54443	Soybean	cytosol, mitochondrion	32.83	33.78
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	34.33	33.64
CDY36926	Canola	cytosol	31.52	32.68
Bra029250.1-P	Field mustard	cytosol	33.77	32.61
AT3G47820.1	Thale cress	cytosol	32.27	32.39
CDY44594	Canola	cytosol, plastid	33.02	32.06
AT5G62560.1	Thale cress	cytosol	33.4	31.84
CDY16770	Canola	cytosol, mitochondrion	32.83	31.36
Bra025605.1-P	Field mustard	cytosol, plastid	33.02	31.32
AT5G65200.1	Thale cress	cytosol, mitochondrion	32.46	31.12
CDX87251	Canola	mitochondrion	32.83	31.08
Solyc03g113870.1.1	Tomato	cytosol	30.77	31.06
PGSC0003DMT400062863	Potato	cytosol	31.14	31.03
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.46	30.95
AT5G40140.1	Thale cress	plastid	31.89	30.91
CDY53109	Canola	cytosol, plastid	32.08	30.87
CDY37807	Canola	mitochondrion	31.52	30.66
Bra031875.1-P	Field mustard	mitochondrion	31.14	30.4
CDY33979	Canola	mitochondrion	30.77	29.66
KRG93403	Soybean	cytosol	31.52	29.58
KRH18582	Soybean	cytosol	31.52	27.68

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6EPI6	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016874	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
ProteinID:ONM21683.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF79	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002216D6E
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d005699	EnsemblPlants:Zm00001d005699_P001	EnsemblPlants:Zm00001d005699_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Ubiquitin-protein ligase

Coordinates

chr2:-:183810719..183812320

Molecular Weight (calculated)

54685.5 Da

IEP (calculated)

8.767

GRAVY (calculated)

0.003

Length

533 amino acids

Sequence
(BLAST)

001: MGAARPRRWK LPFHRTTSAP CSPSSRSSAP PPGPASPARS EAWVAQPVPE AFLCPISGAL MADPVILPSG NTYERACLQA CAELAFLPPG AEAGGLRTVI
101: PNAALKAAIG TWCARSGRAG PPPPPLSAEA ARQAVLRAMP PAAARTTARR VAAVMAASTS NSSTSSYGSA SEITAAEDEA EAEAPADPLE DDVVGKVMRA
201: DDGSGGVVAA AMGALREATR EGAERRLALC TPRLLGALRR VLLLPRHAAA RVDAAAALVN LSLEPGNKVR IVRAGAVPAL VEVLRSAASA PEAREHAAGA
301: LFGLAIHEDN RAAIGVLGAV PPLLDLLASR AHPPRARRDA GMALYHLTLA AVNQSKVARF PGAPKALLAV ASGAADPGPV RRLALMVACN VAACAEGRNA
401: LMDAGAVASV SAILLSDGGA AAAAAGLEEW CVSAMYAMSR GSLRFRGLAR AAGADRALRR VVADEGGGVR REMARKTLRA MRGDLDNDDG GTEYNNDLTG
501: SSAECEDCGG SIVSDGLMSF RRRQRELGNT AEF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.