CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005699_P001	Maize	mitochondrion	56.7	61.16
OQU89450	Sorghum	mitochondrion	61.91	60.65
Zm00001d020358_P001	Maize	mitochondrion	54.61	55.97
HORVU6Hr1G043090.2	Barley	cytosol	34.78	54.95
HORVU4Hr1G008170.1	Barley	cytosol	16.7	52.17
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	15.65	52.02
TraesCS5A01G201400.1	Wheat	mitochondrion	48.87	50.63
TraesCS5D01G207500.1	Wheat	mitochondrion	49.22	50.36
TraesCS5B01G200100.1	Wheat	mitochondrion	49.22	50.36
Os09t0386200-01	Rice	plasma membrane	47.83	50.27
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	48.0	49.73
HORVU4Hr1G082630.1	Barley	plastid	12.0	49.29
HORVU6Hr1G091220.1	Barley	plastid	16.17	48.19
GSMUA_Achr10P...	Banana	cytosol	33.04	41.58
OQU80448	Sorghum	mitochondrion	40.35	40.49
HORVU6Hr1G008010.2	Barley	plastid	12.7	38.83
GSMUA_Achr7P19940_001	Banana	plastid	35.3	38.37
GSMUA_Achr3P06000_001	Banana	plastid	34.26	37.96
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.83	37.73
GSMUA_Achr9P14450_001	Banana	plastid	30.26	37.42
KXG19688	Sorghum	plastid	33.74	36.06
Bra018108.1-P	Field mustard	cytosol	18.96	33.44
Solyc02g087200.1.1	Tomato	mitochondrion	26.78	32.02
CDY24151	Canola	cytosol	25.74	31.29
PGSC0003DMT400001437	Potato	mitochondrion	26.26	31.07
CDY69575	Canola	cytosol	26.09	30.74
CDY30728	Canola	cytosol	26.78	30.2
KRH63473	Soybean	cytosol, plastid	27.48	30.1
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	28.0	29.6
KRH54443	Soybean	cytosol, mitochondrion	26.61	29.54
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	26.43	29.06
Solyc03g113870.1.1	Tomato	cytosol	26.43	28.79
Bra029250.1-P	Field mustard	cytosol	27.3	28.44
PGSC0003DMT400062863	Potato	cytosol	26.09	28.04
CDY36926	Canola	cytosol	24.7	27.63
AT5G65200.1	Thale cress	cytosol, mitochondrion	26.61	27.52
AT3G47820.1	Thale cress	cytosol	25.22	27.31
Bra031875.1-P	Field mustard	mitochondrion	25.91	27.29
CDY37807	Canola	mitochondrion	25.91	27.19
CDX87251	Canola	mitochondrion	26.43	27.0
CDY16770	Canola	cytosol, mitochondrion	26.09	26.88
CDY33979	Canola	mitochondrion	25.74	26.76
Bra035890.1-P	Field mustard	mitochondrion, plastid	25.91	26.65
AT5G62560.1	Thale cress	cytosol	25.91	26.65
CDY44594	Canola	cytosol, plastid	25.39	26.59
KRG93403	Soybean	cytosol	25.74	26.06
CDY53109	Canola	cytosol, plastid	25.04	25.99
Bra025605.1-P	Field mustard	cytosol, plastid	25.39	25.98
AT5G40140.1	Thale cress	plastid	24.52	25.64
KRH18582	Soybean	cytosol	25.91	24.55

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	UniProt:C5WVI3
EnsemblPlants:EER92069	ProteinID:EER92069	ProteinID:EER92069.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000225	InterPro:IPR011989	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79	SMART:SM00185
EnsemblPlantsGene:SORBI_3001G277700	SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.19034	UniParc:UPI000B8BA4E2	RefSeq:XP_002465071.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54133502..54137545

Molecular Weight (calculated)

59703.8 Da

IEP (calculated)

8.708

GRAVY (calculated)

-0.210

Length

575 amino acids

Sequence
(BLAST)

001: MDIGVHGGSR DRERGGRGGG SGSGACGRTT ESSPAGSPDL PGAAVADGLI RPIRREWRQP EEGSSGGRGV ARQWLRRRLR GGDGLHRGGR GSRVVSGALM
101: ADPVILPSGK TFERSSRFCP PASTPGAPTP SSIDAGGADT LIHNAALNAA IGTWCARSGR AVPAPPSAEA ARQAVLRVMP LAVAAAAKSV RTTTARRVAV
201: LAASTSNSSY SSPTESTSSY GSASEITAAE DDAKEEEAPR RRIVKDVEVE ADPPVATPVD PLEDDVVGKV MDADDDGVVA AAMGALREAT WEGAERRRAL
301: CTPWLLGALR RVPRLPRHAP ARVDAAAALV NLTLEPANKV RIMRVGAVPA LVEVLRSGAS VPEAREHAAG ALFGLALNED NRAAIGVLGA VPPLLDQLTS
401: PAQYPPRACC DAGMALYHLT FAAVNQSKVA RFPGAPKALL AVARGRMELM VACNVAACAE GRNARMDAGA IASVSAILLA SPSHDNAGSS GTADLEEWCV
501: SAMYAMSRGS LRFRGLARAA SADRALRRVV ADEGGGVRRE MARKTLRAMR GDLDDEDGGG EYNDLTGNRC QISVH

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.