CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031875.1-P	Field mustard	mitochondrion	96.72	97.07
CDY33979	Canola	mitochondrion	91.06	90.24
AT5G65200.1	Thale cress	cytosol, mitochondrion	80.29	79.14
KRH63473	Soybean	cytosol, plastid	55.84	58.29
CDY24151	Canola	cytosol	50.18	58.14
KRH54443	Soybean	cytosol, mitochondrion	54.38	57.53
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	53.1	55.64
CDY69575	Canola	cytosol	49.09	55.12
CDY30728	Canola	cytosol	50.55	54.31
CDY36926	Canola	cytosol	49.09	52.33
CDY16770	Canola	cytosol, mitochondrion	52.19	51.25
CDX87251	Canola	mitochondrion	51.82	50.44
Solyc03g113870.1.1	Tomato	cytosol	45.07	46.78
PGSC0003DMT400062863	Potato	cytosol	45.07	46.17
CDY44594	Canola	cytosol, plastid	44.16	44.08
CDY53109	Canola	cytosol, plastid	43.98	43.5
GSMUA_Achr9P14450_001	Banana	plastid	31.2	36.77
GSMUA_Achr10P...	Banana	cytosol	30.66	36.76
GSMUA_Achr3P06000_001	Banana	plastid	34.31	36.22
HORVU4Hr1G082630.1	Barley	plastid	9.12	35.71
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.57	35.67
HORVU4Hr1G008170.1	Barley	cytosol	11.86	35.33
GSMUA_Achr7P19940_001	Banana	plastid	33.58	34.78
Zm00001d044773_P001	Maize	cytosol	28.65	34.06
Os06t0238000-00	Rice	plasma membrane	32.12	33.98
TraesCS7A01G194900.1	Wheat	mitochondrion	31.93	33.91
HORVU6Hr1G043090.2	Barley	cytosol	22.45	33.79
TraesCS7D01G196500.1	Wheat	mitochondrion	31.75	33.72
TraesCS7B01G100600.1	Wheat	mitochondrion	31.57	33.27
HORVU7Hr1G039760.2	Barley	mitochondrion	31.2	32.63
Os06t0238200-00	Rice	plasma membrane	29.2	32.59
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.3	31.89
HORVU6Hr1G091220.1	Barley	plastid	11.13	31.61
Zm00001d005699_P001	Maize	mitochondrion	30.66	31.52
TraesCS5A01G201400.1	Wheat	mitochondrion	31.75	31.35
Os09t0386200-01	Rice	plasma membrane	31.2	31.26
TraesCS5B01G200100.1	Wheat	mitochondrion	31.93	31.14
KXG19688	Sorghum	plastid	30.47	31.04
TraesCS5D01G207500.1	Wheat	mitochondrion	31.75	30.96
Zm00001d020358_P001	Maize	mitochondrion	31.39	30.66
TraesCS7D01G229000.1	Wheat	mitochondrion	29.93	30.48
HORVU6Hr1G008010.2	Barley	plastid	10.4	30.32
TraesCS7B01G194100.1	Wheat	mitochondrion	29.93	30.31
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.49	30.06
HORVU7Hr1G046920.1	Barley	mitochondrion	29.01	29.44
OQU89450	Sorghum	mitochondrion	31.39	29.3
GSMUA_Achr9P28140_001	Banana	cytosol	25.18	29.24
TraesCS7A01G225500.1	Wheat	mitochondrion	28.65	29.07
OQU80448	Sorghum	mitochondrion	28.47	27.23
Os08t0421850-00	Rice	mitochondrion	28.65	26.84
Zm00001d032264_P001	Maize	mitochondrion	27.74	26.53
EER92069	Sorghum	cytosol	27.19	25.91

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078HIW4	UniProt:A0A078HIW4	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY37807	ProteinID:CDY37807	ProteinID:CDY37807.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00064748001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EEBE4B	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaAnng04680DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HIW4]

Coordinates

chrLK032409:-:11828..13774

Molecular Weight (calculated)

60627.2 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.376

Length

548 amino acids

Sequence
(BLAST)

001: MGKSGRLRWN PFSHRTSSSR QEQQQQQQQP PIEFICPISK TIMSDPVVVS SGQTFERVCV QVCRDLGFIP KLNDLNENPP DFSTVIPNRN MKSTIDGWCD
101: SVGVERPQPP DYSAVETNLR HQMPPSEVEI RVSEQELLRA VADRAPVIYH HADSDLMGRR KPTGDFNSTS SDESVIVAQS PFTPLPLTTR PACFSPSSSS
201: SEIEFSAAAA ANSPEEEEIY NKLKSSDVFD QEQGLIMMRK MTRTKDEARV SLCSSRILAF LKSMIVSRYS LVQTNSLASL VNLSLEKTNK LTIVRLGFIP
301: LLIDVLKSGS KEAQEHAAGS IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDAG LALYHLSLNQ TNRLKLVRLG AVPVLFSLVR SGESASRALL
401: VICNLACCSE GRSAMLDANA VGILVGKLRE EEERRGEESR SSAAARENCV AALFALSHES LRFKGLAKEA RVVEVLKEVE ERGTERAREK AKKILQLMRE
501: RVPEEEEDDG EGTVDWDRVI LDSNGSIRSR FRGGGGRNRM VTQNSSGF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.