Factsheet for TraesCS7A01G225500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G046920.1	Barley	mitochondrion	89.26	89.26
TraesCS7B01G194100.1	Wheat	mitochondrion	87.78	87.62
TraesCS7D01G229000.1	Wheat	mitochondrion	86.11	86.43
Os08t0421850-00	Rice	mitochondrion	63.52	58.63
OQU80448	Sorghum	mitochondrion	60.37	56.89
Zm00001d032264_P001	Maize	mitochondrion	58.89	55.5
TraesCS5A01G201400.1	Wheat	mitochondrion	54.07	52.61
GSMUA_Achr7P19940_001	Banana	plastid	42.59	43.48
GSMUA_Achr5P05220_001	Banana	mitochondrion	37.78	42.06
GSMUA_Achr10P...	Banana	cytosol	35.37	41.79
GSMUA_Achr3P06000_001	Banana	plastid	40.0	41.62
GSMUA_Achr9P14450_001	Banana	plastid	35.0	40.65
TraesCS7A01G194900.1	Wheat	mitochondrion	38.7	40.5
Bra018108.1-P	Field mustard	cytosol	21.67	35.89
CDY69575	Canola	cytosol	31.48	34.84
CDY24151	Canola	cytosol	30.19	34.46
Solyc02g087200.1.1	Tomato	mitochondrion	30.37	34.1
PGSC0003DMT400001437	Potato	mitochondrion	30.56	33.95
CDY30728	Canola	cytosol	31.85	33.73
KRH63473	Soybean	cytosol, plastid	32.22	33.14
KRH54443	Soybean	cytosol, mitochondrion	31.48	32.82
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	31.3	32.31
CDY36926	Canola	cytosol	30.0	31.52
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	31.48	31.25
Bra029250.1-P	Field mustard	cytosol	31.85	31.16
AT5G62560.1	Thale cress	cytosol	32.04	30.95
AT3G47820.1	Thale cress	cytosol	30.0	30.51
Bra035890.1-P	Field mustard	mitochondrion, plastid	31.11	30.05
CDY16770	Canola	cytosol, mitochondrion	30.93	29.93
PGSC0003DMT400062863	Potato	cytosol	29.63	29.91
CDY44594	Canola	cytosol, plastid	30.37	29.87
CDX87251	Canola	mitochondrion	30.93	29.66
Solyc03g113870.1.1	Tomato	cytosol	28.89	29.55
CDY53109	Canola	cytosol, plastid	30.19	29.42
AT5G40140.1	Thale cress	plastid	29.81	29.27
Bra025605.1-P	Field mustard	cytosol, plastid	30.19	29.0
Bra031875.1-P	Field mustard	mitochondrion	29.26	28.94
CDY37807	Canola	mitochondrion	29.07	28.65
AT5G65200.1	Thale cress	cytosol, mitochondrion	29.44	28.6
CDY33979	Canola	mitochondrion	29.26	28.57
KRG93403	Soybean	cytosol	27.41	26.06
KRH18582	Soybean	cytosol	27.04	24.05

Protein Annotations

Gene3D:1.25.10.110	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF221	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7A01G225500
EnsemblPlants:TraesCS7A01G225500.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16453	SEG:seg	:

Description

No Description!

Coordinates

chr7A:-:194806966..194808802

Molecular Weight (calculated)

56052.1 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.064

Length

540 amino acids

Sequence
(BLAST)

001: MGAARAWRWK LLPFHSKPPP PPPPSLPATL SPVDKEEDVP REFLCPILGA PMSDPVILPS GRTYERACIQ ACAELSVSPP GLEGDSPASG GVVPIPNDAL
101: GAAIRTWSAR SGRAPPAAPS AAAAREAVLR AVPSPRPPGR SSSNLSCSSR ASAASTSSSS SRSSSEITAV EQLEMVCAKK TESLRVGEGE EEVGQLTVKA
201: VGGGDEWEVE AAMAALRRAT RESAPRRRAL CVPQLLAALR RVLLSARHSA AARADATAAL ANLSLEPENR VPIVRAGAVP ALVEVASLGA AAPEACEHAA
301: GALFGLALHE GNRAAIGVLG ALPPLLALLT TGDQAPRARR DAGMALLHLS LAAVNQSKLA RAPGAAKNLL SISSDSNEPL PIRRLALMVI CNVAACTEGR
401: TALMDAGAVA TFSVILSDDA HRSELEECCV AALYDMSKGS PRFRGLARAA GADRPLILIA EQADPGVHKD MARKALRAML GLGDINGGGL HDFSNTERND
501: DDSGTMASSL PVRRRRAASW GAPPASKLSS SHHWRSVCID

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.