Factsheet for PGSC0003DMT400001437

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087200.1.1	Tomato	mitochondrion	95.47	96.47
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	59.88	53.49
CDY44594	Canola	cytosol, plastid	57.0	50.46
CDY53109	Canola	cytosol, plastid	57.0	50.0
AT5G40140.1	Thale cress	plastid	56.58	50.0
Bra025605.1-P	Field mustard	cytosol, plastid	56.79	49.11
KRG93403	Soybean	cytosol	56.58	48.42
KRH18582	Soybean	cytosol	56.79	45.47
PGSC0003DMT400062863	Potato	cytosol	46.71	42.43
GSMUA_Achr9P14450_001	Banana	plastid	34.77	36.34
GSMUA_Achr5P05220_001	Banana	mitochondrion	35.6	35.67
TraesCS7D01G196500.1	Wheat	mitochondrion	37.65	35.47
GSMUA_Achr3P06000_001	Banana	plastid	37.86	35.45
TraesCS7A01G194900.1	Wheat	mitochondrion	37.04	34.88
GSMUA_Achr7P19940_001	Banana	plastid	37.86	34.78
Zm00001d044773_P001	Maize	cytosol	32.92	34.71
GSMUA_Achr10P...	Banana	cytosol	32.51	34.57
TraesCS7B01G100600.1	Wheat	mitochondrion	36.83	34.42
Os06t0238000-00	Rice	plasma membrane	36.63	34.36
HORVU6Hr1G043090.2	Barley	cytosol	25.51	34.07
HORVU7Hr1G039760.2	Barley	mitochondrion	36.63	33.97
HORVU4Hr1G008170.1	Barley	cytosol	12.55	33.15
HORVU4Hr1G082630.1	Barley	plastid	9.47	32.86
TraesCS5A01G201400.1	Wheat	mitochondrion	37.45	32.79
Zm00001d005699_P001	Maize	mitochondrion	35.6	32.46
Os06t0238200-00	Rice	plasma membrane	32.72	32.38
Os09t0386200-01	Rice	plasma membrane	36.42	32.36
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	36.63	32.07
TraesCS5B01G200100.1	Wheat	mitochondrion	36.83	31.85
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.32	31.79
Zm00001d020358_P001	Maize	mitochondrion	36.63	31.73
TraesCS5D01G207500.1	Wheat	mitochondrion	36.63	31.67
KXG19688	Sorghum	plastid	34.98	31.6
TraesCS7D01G229000.1	Wheat	mitochondrion	34.77	31.41
TraesCS7B01G194100.1	Wheat	mitochondrion	34.36	30.87
TraesCS7A01G225500.1	Wheat	mitochondrion	33.95	30.56
GSMUA_Achr9P28140_001	Banana	cytosol	29.63	30.51
HORVU7Hr1G046920.1	Barley	mitochondrion	33.54	30.19
OQU89450	Sorghum	mitochondrion	36.01	29.81
Os08t0421850-00	Rice	mitochondrion	34.57	28.72
OQU80448	Sorghum	mitochondrion	32.92	27.92
Zm00001d032264_P001	Maize	mitochondrion	32.51	27.57
HORVU6Hr1G091220.1	Barley	plastid	10.91	27.46
EER92069	Sorghum	cytosol	31.07	26.26
HORVU6Hr1G008010.2	Barley	plastid	8.64	22.34

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102580324	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M0ZIH3	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400000531	PGSC:PGSC0003DMG400000531	EnsemblPlants:PGSC0003DMT400001437
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002954382	InterPro:Ubox_domain	RefSeq:XP_006338525.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000531]

Coordinates

chr2:+:46769795..46772479

Molecular Weight (calculated)

53468.3 Da

IEP (calculated)

7.286

GRAVY (calculated)

-0.154

Length

486 amino acids

Sequence
(BLAST)

001: MGTSKQRWRI SFHKSPSKQP PIPIEFVCPI SGSLMADPVI VSSGHTFERH CVHACKSLSF TPVLPDGSIP DFSTVIPNLA LKSTILNFCR SSFLDPPKPI
101: NFLTAENLVF TLKATRNPQN LAKDTARFNG VRVIQSETEL NRVPSHISTS SEESVTPRSG PTYYSSSSAS DVETLNPNSI EEDELLVKLK SSQISEQEEA
201: VISFRKLTRT REETRFQLCT PRILSALRVL ITSRYVSVQV NSVAALVNLS LENRNKVKIL RSGIVPSLID VLKSGFQESQ EHVAGALFSL ALDDQNKTAI
301: GVLGALPPLL HALRSESERT RHDSALALYH LSLVQSNRAK LVKLGAVQAL LGMVKTGHMM GRILLILCNL AASSEGRAAM LDGGAVECFV CMLRKGEFDS
401: ESTRENCLAA LYGLSHGGLR FKGLAKEAAA EELLIQIEEM GSERAKDKVR KILEVLRQKD EEEEEVDWEK LLNSDDDISQ ARISSS

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.