Factsheet for TraesCS7D01G229000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G194100.1	Wheat	mitochondrion	92.19	91.68
HORVU7Hr1G046920.1	Barley	mitochondrion	87.17	86.85
TraesCS7A01G225500.1	Wheat	mitochondrion	86.43	86.11
Os08t0421850-00	Rice	mitochondrion	62.45	57.44
OQU80448	Sorghum	mitochondrion	59.11	55.5
Zm00001d032264_P001	Maize	mitochondrion	57.06	53.58
TraesCS5D01G207500.1	Wheat	mitochondrion	51.67	49.47
GSMUA_Achr7P19940_001	Banana	plastid	42.75	43.48
GSMUA_Achr10P...	Banana	cytosol	36.25	42.67
GSMUA_Achr5P05220_001	Banana	mitochondrion	38.29	42.47
GSMUA_Achr3P06000_001	Banana	plastid	39.59	41.04
TraesCS7D01G196500.1	Wheat	mitochondrion	38.48	40.12
GSMUA_Achr9P14450_001	Banana	plastid	34.39	39.78
Bra018108.1-P	Field mustard	cytosol	22.49	37.12
CDY24151	Canola	cytosol	31.23	35.52
Solyc02g087200.1.1	Tomato	mitochondrion	31.23	34.93
CDY69575	Canola	cytosol	31.6	34.84
PGSC0003DMT400001437	Potato	mitochondrion	31.41	34.77
KRH63473	Soybean	cytosol, plastid	33.46	34.29
CDY30728	Canola	cytosol	31.97	33.73
KRH54443	Soybean	cytosol, mitochondrion	32.34	33.59
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.34	33.27
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	32.9	32.54
CDY36926	Canola	cytosol	30.86	32.3
AT3G47820.1	Thale cress	cytosol	31.41	31.83
Bra029250.1-P	Field mustard	cytosol	31.97	31.16
AT5G62560.1	Thale cress	cytosol	32.16	30.95
CDY44594	Canola	cytosol, plastid	31.41	30.78
Bra035890.1-P	Field mustard	mitochondrion, plastid	31.41	30.23
CDY53109	Canola	cytosol, plastid	31.04	30.14
CDY16770	Canola	cytosol, mitochondrion	31.23	30.11
Bra031875.1-P	Field mustard	mitochondrion	30.48	30.04
AT5G65200.1	Thale cress	cytosol, mitochondrion	31.04	30.04
CDY33979	Canola	mitochondrion	30.86	30.02
CDY37807	Canola	mitochondrion	30.48	29.93
PGSC0003DMT400062863	Potato	cytosol	29.74	29.91
Bra025605.1-P	Field mustard	cytosol, plastid	31.23	29.89
CDX87251	Canola	mitochondrion	31.23	29.84
AT5G40140.1	Thale cress	plastid	30.48	29.82
Solyc03g113870.1.1	Tomato	cytosol	29.0	29.55
KRG93403	Soybean	cytosol	27.51	26.06
KRH18582	Soybean	cytosol	27.88	24.71

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF221	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G229000	EnsemblPlants:TraesCS7D01G229000.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr7D:+:189170432..189172291

Molecular Weight (calculated)

56081.1 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.073

Length

538 amino acids

Sequence
(BLAST)

001: MGAARAWRWK LLPFHSKPPP PPSLPATLSP VDKEEEVPRE FLCPILGAPM SDPVILLSGR TYERACIQAC AELSVSPPGV EGDSPASGGV VPIPNDALGA
101: AIRTWSARSG RAPPAAPSAA AAREAVLRAV PSPRPPGRSS SNLSCSSRAS AASTSSSSSR SSSEITAVER LEMVCEKKTE SLRIGEDEEE VGQLTVKAVS
201: GGDEWEVESA MAALRRATRE SAPRRRALCV PQLLAALRRV LLSARHSAAA RADATAALAN LSLEPENRVP IVRAGAVPAL VEVASLGAAA PEACEHAAGA
301: LFGLALHEGN RAAIGVLGAL PPLLALLTTG DQAPRARRDA GMALLHLSLA AVNQSKLARA PGAAKNLLSI SSDSNEPLPI RRLALMVICN VAACTEGRTA
401: LMDAGAVSTF SVILSDDAHR SELQECCVAA LYDMSKGSPR FRGLARAAGA DRPLILIAEQ ADPGVHKDMA RKALRAMLGL GDINGGGLHD FSNSERNDDD
501: SGTIAPSLPV RRRRAASWGA PPASKLPSSH HWRSVCID

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.