Factsheet for Bra018108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36926	Canola	cytosol	97.55	61.87
AT3G47820.1	Thale cress	cytosol	88.04	54.05
Bra029250.1-P	Field mustard	cytosol	79.75	47.1
Bra035890.1-P	Field mustard	mitochondrion, plastid	76.07	44.36
Bra031875.1-P	Field mustard	mitochondrion	59.51	35.53
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	54.91	34.23
KRH54443	Soybean	cytosol, mitochondrion	53.68	33.78
KRH63473	Soybean	cytosol, plastid	54.29	33.71
HORVU4Hr1G008170.1	Barley	cytosol	18.71	33.15
HORVU6Hr1G043090.2	Barley	cytosol	35.58	31.87
Zm00001d044773_P001	Maize	cytosol	41.72	29.5
HORVU4Hr1G082630.1	Barley	plastid	12.58	29.29
Bra025605.1-P	Field mustard	cytosol, plastid	50.31	29.18
GSMUA_Achr10P...	Banana	cytosol	40.8	29.1
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	15.03	28.32
PGSC0003DMT400062863	Potato	cytosol	45.71	27.85
Solyc03g113870.1.1	Tomato	cytosol	45.09	27.84
GSMUA_Achr5P05220_001	Banana	mitochondrion	41.1	27.63
TraesCS7D01G196500.1	Wheat	mitochondrion	41.72	26.36
TraesCS7A01G194900.1	Wheat	mitochondrion	41.1	25.97
TraesCS7B01G100600.1	Wheat	mitochondrion	41.41	25.96
Os06t0238000-00	Rice	plasma membrane	40.8	25.68
GSMUA_Achr9P14450_001	Banana	plastid	36.5	25.59
HORVU7Hr1G039760.2	Barley	mitochondrion	41.1	25.57
GSMUA_Achr3P06000_001	Banana	plastid	40.49	25.43
GSMUA_Achr7P19940_001	Banana	plastid	40.49	24.95
KXG19688	Sorghum	plastid	41.1	24.91
HORVU6Hr1G091220.1	Barley	plastid	14.72	24.87
Os06t0238200-00	Rice	plasma membrane	36.2	24.03
Zm00001d005699_P001	Maize	mitochondrion	38.65	23.64
TraesCS5A01G201400.1	Wheat	mitochondrion	40.18	23.6
HORVU6Hr1G008010.2	Barley	plastid	13.5	23.4
TraesCS5D01G207500.1	Wheat	mitochondrion	40.18	23.31
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	39.26	23.06
TraesCS5B01G200100.1	Wheat	mitochondrion	39.57	22.95
TraesCS7D01G229000.1	Wheat	mitochondrion	37.12	22.49
TraesCS7B01G194100.1	Wheat	mitochondrion	37.12	22.37
HORVU7Hr1G046920.1	Barley	mitochondrion	36.5	22.04
Zm00001d020358_P001	Maize	mitochondrion	37.73	21.93
Os08t0421850-00	Rice	mitochondrion	38.96	21.71
TraesCS7A01G225500.1	Wheat	mitochondrion	35.89	21.67
Zm00001d032264_P001	Maize	mitochondrion	38.04	21.64
Os09t0386200-01	Rice	plasma membrane	36.2	21.57
OQU80448	Sorghum	mitochondrion	37.73	21.47
OQU89450	Sorghum	mitochondrion	38.34	21.29
GSMUA_Achr9P28140_001	Banana	cytosol	29.75	20.55
EER92069	Sorghum	cytosol	33.44	18.96

Protein Annotations

EnsemblPlants:Bra018108.1	EnsemblPlants:Bra018108.1-P	EnsemblPlantsGene:Bra018108	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000253F38F	UniProt:M4DNM1	MapMan:19.2.2.1.5.2.1	:	:

Description

AT3G47820 (E=1e-141) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA06:-:10276602..10277582

Molecular Weight (calculated)

35185.4 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.081

Length

326 amino acids

Sequence
(BLAST)

001: MSEEEEEIYN KLRSANTVDH EQGLILLRKT TRSSESSRIS LCTERLLSLL RSLLVSRYNI VQTNAAASLV NLSLEKPNKL KIVRSGFVPL LIDVLKSGST
101: EAQEHVIGAL FSLAVEEENK MVIGVLGAVE PLLHALRSSE SERARQDAAL ALYHLSLIPN NRTRLVRAGA VPIMLSMLRS GESASRILLL LCNLAACSEG
201: KGAMLDGNAV AILVGKLREG GADSEAAREN CVGALLTLSV GNMRFRGLAS EAGAEAIMTD IVESEGGSER LKEKAGKILQ AIRGGEREFG EGAEAREWNR
301: MLEASGLSRS QFQGGQKEGF AYSSQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.