CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54443	Soybean	cytosol, mitochondrion	86.67	87.84
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	64.19	64.44
AT5G65200.1	Thale cress	cytosol, mitochondrion	60.38	57.01
Bra031875.1-P	Field mustard	mitochondrion	58.48	56.23
CDY37807	Canola	mitochondrion	58.29	55.84
CDY33979	Canola	mitochondrion	58.67	55.7
CDY24151	Canola	cytosol	48.95	54.33
Bra018108.1-P	Field mustard	cytosol	33.71	54.29
CDY69575	Canola	cytosol	48.38	52.05
CDY30728	Canola	cytosol	50.29	51.76
Solyc03g113870.1.1	Tomato	cytosol	50.29	50.0
CDY36926	Canola	cytosol	47.81	48.83
PGSC0003DMT400062863	Potato	cytosol	49.71	48.78
Bra029250.1-P	Field mustard	cytosol	51.05	48.55
AT3G47820.1	Thale cress	cytosol	48.95	48.4
CDY16770	Canola	cytosol, mitochondrion	51.24	48.21
CDX87251	Canola	mitochondrion	51.62	48.13
Bra035890.1-P	Field mustard	mitochondrion, plastid	51.05	47.94
AT5G62560.1	Thale cress	cytosol	50.1	47.05
KRG93403	Soybean	cytosol	49.52	45.77
KRH18582	Soybean	cytosol	50.1	43.33
GSMUA_Achr10P...	Banana	cytosol	32.95	37.86
GSMUA_Achr3P06000_001	Banana	plastid	37.14	37.57
GSMUA_Achr5P05220_001	Banana	mitochondrion	34.67	37.53
GSMUA_Achr9P14450_001	Banana	plastid	32.95	37.2
Zm00001d044773_P001	Maize	cytosol	32.0	36.44
TraesCS7D01G196500.1	Wheat	mitochondrion	35.62	36.24
Os06t0238000-00	Rice	plasma membrane	35.62	36.1
GSMUA_Achr7P19940_001	Banana	plastid	36.0	35.73
TraesCS7B01G100600.1	Wheat	mitochondrion	35.24	35.58
TraesCS7A01G194900.1	Wheat	mitochondrion	34.86	35.47
HORVU6Hr1G043090.2	Barley	cytosol	24.19	34.89
HORVU7Hr1G039760.2	Barley	mitochondrion	34.48	34.54
TraesCS5A01G201400.1	Wheat	mitochondrion	36.19	34.23
Zm00001d020358_P001	Maize	mitochondrion	36.57	34.22
Zm00001d005699_P001	Maize	mitochondrion	34.67	34.15
KXG19688	Sorghum	plastid	34.86	34.01
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	35.81	33.87
HORVU4Hr1G008170.1	Barley	cytosol	11.81	33.7
TraesCS5D01G207500.1	Wheat	mitochondrion	36.0	33.63
TraesCS7D01G229000.1	Wheat	mitochondrion	34.29	33.46
Os09t0386200-01	Rice	plasma membrane	34.86	33.46
TraesCS5B01G200100.1	Wheat	mitochondrion	35.62	33.27
HORVU4Hr1G082630.1	Barley	plastid	8.76	32.86
TraesCS7B01G194100.1	Wheat	mitochondrion	33.71	32.72
HORVU7Hr1G046920.1	Barley	mitochondrion	33.33	32.41
OQU89450	Sorghum	mitochondrion	36.19	32.37
TraesCS7A01G225500.1	Wheat	mitochondrion	33.14	32.22
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.48	31.79
Os06t0238200-00	Rice	plasma membrane	29.52	31.57
HORVU6Hr1G091220.1	Barley	plastid	11.24	30.57
OQU80448	Sorghum	mitochondrion	32.19	29.49
Zm00001d032264_P001	Maize	mitochondrion	32.0	29.32
GSMUA_Achr9P28140_001	Banana	cytosol	26.29	29.24
Os08t0421850-00	Rice	mitochondrion	32.19	28.89
HORVU6Hr1G008010.2	Barley	plastid	10.1	28.19
EER92069	Sorghum	cytosol	30.1	27.48

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100784564	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02002694	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_04G179300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1JX38	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRH63473	ProteinID:KRH63473	ProteinID:KRH63473.1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000233A7F7	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:44440809..44443301

Molecular Weight (calculated)

57495.9 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.227

Length

525 amino acids

Sequence
(BLAST)

001: MGGNGKHRWK FSFHRSSSQT SNPDPNQVPK EFTCPISGSL MSDPVVVASG QTFERLAVQL CKDLNFSPKL DDGTRPDFST IIPNLAIKTT ILHWCDNSRT
101: QPPLPPDYAS LERHVREEKE KQDLIRVSEK ELLNAVADNP PVIFSHAATE LGPRVNHFNS GSSSEESVII PPSPGTPLPL TIRPTCFSSS SSSCEIEIEN
201: PNTPASEEEE GILKKLKSNE VFEQEEGAIA LRKITRCKEE ARVSLCTPRV LLALRGLLAS RYGVVQVNAV ASLVNLSLEK QNKLKIVRSG FVPFLIDVLK
301: GGLGESQEHA AGALFSLALD DDNKMAIGVL GALHPLMHAL RAESERTRHD SALALYHLSL VQSNRLKLVK LGAVPTLLSM VVAGNLASRV LLILCNLAVC
401: TEGRTAMLDA NAVEILVGLL RGNELDSEAN RENCVAALYA LSHRSLRFKG LAKDARVVEV LKEIEQTGTE RARERARKVL HMMRTVGDGD GDEIDEFYDS
501: AGLTRNRYRV GAARNNNNLV NTTTF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.