Factsheet for PGSC0003DMT400062863

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113870.1.1	Tomato	cytosol	85.05	86.17
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	51.96	53.15
KRH54443	Soybean	cytosol, mitochondrion	49.35	50.97
KRH63473	Soybean	cytosol, plastid	48.78	49.71
PGSC0003DMT400001437	Potato	mitochondrion	42.43	46.71
AT5G65200.1	Thale cress	cytosol, mitochondrion	47.85	46.04
Bra031875.1-P	Field mustard	mitochondrion	46.73	45.79
Bra018108.1-P	Field mustard	cytosol	27.85	45.71
CDY33979	Canola	mitochondrion	47.1	45.57
CDY24151	Canola	cytosol	40.19	45.45
CDY37807	Canola	mitochondrion	46.17	45.07
CDY69575	Canola	cytosol	40.37	44.26
CDY30728	Canola	cytosol	41.87	43.92
CDY36926	Canola	cytosol	40.93	42.61
Bra029250.1-P	Field mustard	cytosol	42.99	41.67
CDX87251	Canola	mitochondrion	43.55	41.39
AT5G62560.1	Thale cress	cytosol	42.99	41.14
CDY16770	Canola	cytosol, mitochondrion	42.62	40.86
AT3G47820.1	Thale cress	cytosol	40.19	40.49
Bra035890.1-P	Field mustard	mitochondrion, plastid	41.87	40.07
GSMUA_Achr10P...	Banana	cytosol	29.72	34.79
GSMUA_Achr9P14450_001	Banana	plastid	29.53	33.98
GSMUA_Achr5P05220_001	Banana	mitochondrion	30.09	33.2
GSMUA_Achr3P06000_001	Banana	plastid	31.59	32.56
Zm00001d044773_P001	Maize	cytosol	28.04	32.54
TraesCS7B01G100600.1	Wheat	mitochondrion	31.59	32.5
HORVU7Hr1G039760.2	Barley	mitochondrion	31.78	32.44
HORVU6Hr1G043090.2	Barley	cytosol	22.06	32.42
TraesCS7A01G194900.1	Wheat	mitochondrion	31.21	32.36
HORVU4Hr1G082630.1	Barley	plastid	8.41	32.14
TraesCS7D01G196500.1	Wheat	mitochondrion	30.84	31.98
Os06t0238000-00	Rice	plasma membrane	30.65	31.66
HORVU4Hr1G008170.1	Barley	cytosol	10.84	31.52
GSMUA_Achr7P19940_001	Banana	plastid	30.84	31.19
TraesCS5A01G201400.1	Wheat	mitochondrion	32.34	31.17
Zm00001d005699_P001	Maize	mitochondrion	31.03	31.14
KXG19688	Sorghum	plastid	31.21	31.04
Zm00001d020358_P001	Maize	mitochondrion	32.52	31.02
Os09t0386200-01	Rice	plasma membrane	31.59	30.9
Os06t0238200-00	Rice	plasma membrane	28.22	30.75
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.91	30.64
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	31.78	30.63
TraesCS5B01G200100.1	Wheat	mitochondrion	31.78	30.25
HORVU7Hr1G046920.1	Barley	mitochondrion	30.47	30.19
TraesCS7B01G194100.1	Wheat	mitochondrion	30.47	30.13
TraesCS7D01G229000.1	Wheat	mitochondrion	29.91	29.74
TraesCS5D01G207500.1	Wheat	mitochondrion	31.21	29.72
OQU89450	Sorghum	mitochondrion	32.52	29.64
TraesCS7A01G225500.1	Wheat	mitochondrion	29.91	29.63
HORVU6Hr1G091220.1	Barley	plastid	10.09	27.98
OQU80448	Sorghum	mitochondrion	29.53	27.57
Zm00001d032264_P001	Maize	mitochondrion	28.97	27.05
GSMUA_Achr9P28140_001	Banana	cytosol	23.36	26.48
EER92069	Sorghum	cytosol	28.04	26.09
Os08t0421850-00	Rice	mitochondrion	28.41	25.98
HORVU6Hr1G008010.2	Barley	plastid	8.04	22.87

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102582496	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M1C9N6	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400024471	PGSC:PGSC0003DMG400024471	EnsemblPlants:PGSC0003DMT400062863
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002948066	InterPro:Ubox_domain	RefSeq:XP_006345013.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400024471]

Coordinates

chr3:+:53718291..53720652

Molecular Weight (calculated)

58834.2 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.284

Length

535 amino acids

Sequence
(BLAST)

001: MYSPFRKANG ETGRHGRSKS VWNIFVYRPS SSKFDKRDPP KELICPIYGC LMFDPVVVST GQSFERTSVQ VCKDLEFKPQ LQNGLNPDFT NVIPNLALRT
101: TILTWCEKSG AEKPQQPDYY AVESVVRASM ASTSSSSISR EDSRIRREDS RIRVSERDLF KGVTENPPML LSHAASEMKS RNNHFYSSSS SEESVIANNS
201: PLLPFKTRLS SYSSLSSQST SSEIISGEVP SSASTSSEDD YYVVQFKKLD VYEQEQAVIS LRKSTRTDEE ARVSLCTPRL LSALKPLLVS RYAGVQPNAV
301: AALVNLSLAE INKVKIVRAG ITSLLIDLLK GGSEETKEHA AGAIFSLALE DDNKTAIGVL GALQPLLHAL RSGTERTRHD SALALYHLTL VQSNRVKLVK
401: LGAANTLLGL LKASDIAGKV MLVVCNLAVC QEGKSALLDA NAVDVLLGIL RNWNKLDEST RENSVAALYS LSQGSLRFKS MAKEAKAGEV LQVVVERGSG
501: RAREKAKKML IAMQRRVKEY DDEEEDANWE GILEG

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.