Factsheet for TraesCS5D01G207500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G201400.1	Wheat	mitochondrion	82.38	83.42
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	82.21	83.24
TraesCS5B01G200100.1	Wheat	mitochondrion	83.1	83.1
HORVU6Hr1G043090.2	Barley	cytosol	51.6	79.67
HORVU6Hr1G091220.1	Barley	plastid	27.22	79.27
HORVU4Hr1G008170.1	Barley	cytosol	23.84	72.83
HORVU4Hr1G082630.1	Barley	plastid	17.62	70.71
Os09t0386200-01	Rice	plasma membrane	66.9	68.74
Zm00001d020358_P001	Maize	mitochondrion	66.01	66.13
Zm00001d005699_P001	Maize	mitochondrion	62.28	65.67
OQU89450	Sorghum	mitochondrion	66.01	63.2
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	19.04	61.85
HORVU6Hr1G008010.2	Barley	plastid	18.86	56.38
TraesCS7D01G229000.1	Wheat	mitochondrion	49.47	51.67
EER92069	Sorghum	cytosol	50.36	49.22
GSMUA_Achr5P05220_001	Banana	mitochondrion	42.35	49.07
GSMUA_Achr10P...	Banana	cytosol	38.08	46.83
GSMUA_Achr3P06000_001	Banana	plastid	42.7	46.24
GSMUA_Achr9P14450_001	Banana	plastid	37.54	45.38
GSMUA_Achr7P19940_001	Banana	plastid	42.53	45.18
TraesCS7D01G196500.1	Wheat	mitochondrion	41.46	45.16
Bra018108.1-P	Field mustard	cytosol	23.31	40.18
CDY24151	Canola	cytosol	31.67	37.63
Solyc02g087200.1.1	Tomato	mitochondrion	31.67	37.01
CDY69575	Canola	cytosol	31.85	36.68
PGSC0003DMT400001437	Potato	mitochondrion	31.67	36.63
CDY30728	Canola	cytosol	32.92	36.27
KRH63473	Soybean	cytosol, plastid	33.63	36.0
KRH54443	Soybean	cytosol, mitochondrion	32.74	35.52
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.74	35.18
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	33.99	35.11
Bra029250.1-P	Field mustard	cytosol	33.81	34.42
CDY36926	Canola	cytosol	30.96	33.85
CDX87251	Canola	mitochondrion	33.1	33.04
CDY44594	Canola	cytosol, plastid	32.03	32.79
CDY16770	Canola	cytosol, mitochondrion	32.38	32.62
AT3G47820.1	Thale cress	cytosol	30.78	32.58
AT5G65200.1	Thale cress	cytosol, mitochondrion	32.03	32.37
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.03	32.2
AT5G40140.1	Thale cress	plastid	31.49	32.18
AT5G62560.1	Thale cress	cytosol	31.85	32.02
Bra031875.1-P	Field mustard	mitochondrion	30.96	31.87
Bra025605.1-P	Field mustard	cytosol, plastid	31.85	31.85
CDY53109	Canola	cytosol, plastid	31.32	31.77
CDY37807	Canola	mitochondrion	30.96	31.75
CDY33979	Canola	mitochondrion	30.78	31.28
Solyc03g113870.1.1	Tomato	cytosol	29.36	31.25
PGSC0003DMT400062863	Potato	cytosol	29.72	31.21
KRG93403	Soybean	cytosol	30.61	30.28
KRH18582	Soybean	cytosol	30.96	28.67

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5D01G207500	EnsemblPlants:TraesCS5D01G207500.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16453
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:313370455..313372220

Molecular Weight (calculated)

58675.7 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.119

Length

562 amino acids

Sequence
(BLAST)

001: MGAARPRRWR FPFQRSAPSS PSSKSLPPAP YSPARSAAAA YPEPERRWAQ QEEEAAPPEF VCPLSGALMA DPAILPSGQT YERACLQACA ELSFLPPGAG
101: SGSDAMIPNS ALKAAIGSWC ARSGRASPRP PSKEAVREAV LRAMPPAAAA AAEAKSVRTR RAAMASSSNS SYSSPASAAS TSTYTSSSEI TPPEEDAAAK
201: PVKEAAKEVE LPVDPLEDEV VATVMDADED GEVAAALAVL RDATRESAER RLALCTPRLL AALRRVLLIP RHASARIDAT AALVNLSLEP ANKVRIVRAG
301: AVPALVEVLR SGGSAPEARE HAAGALFGLA LNEENRAAIG VLGAVPPLLD LLTSPAHHPR ARRDAGMAIY HLSLAAVNQS KVARFPGASK ALLSVASSAA
401: EPTPIRRLAL MVICNVGACS EGRASLMDAG AVAAVSGILL CPHDDSTRVT LAELEEWCVA AIYALSRGSL RFRGLARAAG ADRALRRVAE EGTPGGVRRE
501: MARKTLRAMR GDLDEEADLT SSSLECGDGE DCGGSIVSDG LMSFRRRQRE VGASSCGNTA EF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.