CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18582	Soybean	cytosol	86.62	81.05
Solyc02g087200.1.1	Tomato	mitochondrion	48.24	56.96
PGSC0003DMT400001437	Potato	mitochondrion	48.42	56.58
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	49.12	51.29
CDY44594	Canola	cytosol, plastid	48.77	50.46
AT5G40140.1	Thale cress	plastid	48.59	50.18
KRH54443	Soybean	cytosol, mitochondrion	45.6	50.0
Bra025605.1-P	Field mustard	cytosol, plastid	49.3	49.82
CDY53109	Canola	cytosol, plastid	48.42	49.64
KRH63473	Soybean	cytosol, plastid	45.77	49.52
GSMUA_Achr9P14450_001	Banana	plastid	31.16	38.06
GSMUA_Achr10P...	Banana	cytosol	29.93	37.2
GSMUA_Achr3P06000_001	Banana	plastid	33.98	37.19
Zm00001d044773_P001	Maize	cytosol	28.35	34.92
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.56	34.68
Os06t0238000-00	Rice	plasma membrane	31.51	34.56
GSMUA_Achr5P05220_001	Banana	mitochondrion	29.4	34.43
TraesCS7D01G196500.1	Wheat	mitochondrion	31.16	34.3
TraesCS7B01G100600.1	Wheat	mitochondrion	31.34	34.23
HORVU6Hr1G043090.2	Barley	cytosol	21.83	34.07
TraesCS7A01G194900.1	Wheat	mitochondrion	30.81	33.91
GSMUA_Achr7P19940_001	Banana	plastid	31.51	33.84
KXG19688	Sorghum	plastid	31.34	33.09
HORVU7Hr1G039760.2	Barley	mitochondrion	30.46	33.02
Zm00001d020358_P001	Maize	mitochondrion	31.51	31.91
Zm00001d005699_P001	Maize	mitochondrion	29.58	31.52
HORVU4Hr1G008170.1	Barley	cytosol	10.04	30.98
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	29.93	30.63
TraesCS5A01G201400.1	Wheat	mitochondrion	29.93	30.63
TraesCS5D01G207500.1	Wheat	mitochondrion	30.28	30.61
Os06t0238200-00	Rice	plasma membrane	26.41	30.55
TraesCS5B01G200100.1	Wheat	mitochondrion	29.93	30.25
GSMUA_Achr9P28140_001	Banana	cytosol	25.0	30.08
HORVU4Hr1G082630.1	Barley	plastid	7.39	30.0
Os09t0386200-01	Rice	plasma membrane	28.17	29.25
OQU89450	Sorghum	mitochondrion	29.75	28.79
HORVU6Hr1G091220.1	Barley	plastid	9.68	28.5
TraesCS7B01G194100.1	Wheat	mitochondrion	26.23	27.54
TraesCS7D01G229000.1	Wheat	mitochondrion	26.06	27.51
TraesCS7A01G225500.1	Wheat	mitochondrion	26.06	27.41
HORVU7Hr1G046920.1	Barley	mitochondrion	25.88	27.22
Zm00001d032264_P001	Maize	mitochondrion	26.76	26.53
OQU80448	Sorghum	mitochondrion	26.23	26.0
EER92069	Sorghum	cytosol	26.06	25.74
Os08t0421850-00	Rice	mitochondrion	26.23	25.47
HORVU6Hr1G008010.2	Barley	plastid	8.1	24.47

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100798675	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02011551	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_19G013500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:K7MVX7	EnsemblPlants:KRG93403	ProteinID:KRG93403	ProteinID:KRG93403.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023D8B29	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:1275080..1277652

Molecular Weight (calculated)

62145.9 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.289

Length

568 amino acids

Sequence
(BLAST)

001: MEIQQSLKLT IHKKWPSSPK KPPKETEPIT TTPTTPKLKW KKIFFQTKTK TQTQTPPEEF LCPISHSLMF DPVIVSSGHS FERSSVEACI NVNFTPQLPD
101: GTTPDFSTLI PNLALKSAIL KWCQSTHTPP PPHPNNNNNH LVQTLISSNP SLVPTLNPPN PSLVHTNPTP EKISDQDLIL NSLNENPPLT NLRHHAETEV
201: PIRRTHLYTS SDESIATTSA STPPLQLSTR PSCCYYSSPS SSELEPATTP EEEEIMTKLK NPQHSIIEEA LISLRKLTRI REETRLQLCT PRLLSALRSL
301: VLSKHVNVQV NALASVVNLS LEKSNKVRIV RSGMVPPLIE VLKFGSSEAQ EHGAGALFSL AMDDDNKTAI GVLGGLAPLL HMLRSESERT RHDSALALYH
401: LSLVQSNRSK MVKLGSVPVL LSMVKSGHMM GRVMLILGNL GSGSDGRAAM LDAGVVECLV GLLSGPEPGT GSTRESCVAV MYALSHGGLR FKAVAKAAGV
501: VEVLQKVEKM GSERARRKVR KILEIMRTKE VEEEDVDWEE LLDSGLGCRT RSRLGGGLDE SSANSAEF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.