Factsheet for Solyc02g087200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001437	Potato	mitochondrion	96.47	95.47
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	60.5	53.49
CDY44594	Canola	cytosol, plastid	57.38	50.27
CDY53109	Canola	cytosol, plastid	57.38	49.82
AT5G40140.1	Thale cress	plastid	56.96	49.82
Bra025605.1-P	Field mustard	cytosol, plastid	57.17	48.93
KRG93403	Soybean	cytosol	56.96	48.24
Solyc03g113870.1.1	Tomato	cytosol	50.94	46.4
KRH18582	Soybean	cytosol	57.17	45.3
GSMUA_Achr9P14450_001	Banana	plastid	34.93	36.13
GSMUA_Achr5P05220_001	Banana	mitochondrion	36.17	35.88
GSMUA_Achr3P06000_001	Banana	plastid	38.46	35.65
TraesCS7D01G196500.1	Wheat	mitochondrion	37.63	35.08
GSMUA_Achr10P...	Banana	cytosol	33.06	34.79
GSMUA_Achr7P19940_001	Banana	plastid	38.25	34.78
Zm00001d044773_P001	Maize	cytosol	33.26	34.71
TraesCS7A01G194900.1	Wheat	mitochondrion	37.01	34.5
TraesCS7B01G100600.1	Wheat	mitochondrion	37.01	34.23
Os06t0238000-00	Rice	plasma membrane	36.8	34.17
HORVU6Hr1G043090.2	Barley	cytosol	25.78	34.07
HORVU7Hr1G039760.2	Barley	mitochondrion	36.8	33.78
Zm00001d005699_P001	Maize	mitochondrion	36.17	32.65
TraesCS5A01G201400.1	Wheat	mitochondrion	37.63	32.61
HORVU4Hr1G008170.1	Barley	cytosol	12.47	32.61
Os06t0238200-00	Rice	plasma membrane	33.06	32.38
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.64	32.37
HORVU4Hr1G082630.1	Barley	plastid	9.36	32.14
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	37.01	32.07
TraesCS5B01G200100.1	Wheat	mitochondrion	37.21	31.85
Zm00001d020358_P001	Maize	mitochondrion	37.01	31.73
TraesCS5D01G207500.1	Wheat	mitochondrion	37.01	31.67
Os09t0386200-01	Rice	plasma membrane	35.97	31.63
KXG19688	Sorghum	plastid	35.34	31.6
TraesCS7D01G229000.1	Wheat	mitochondrion	34.93	31.23
TraesCS7B01G194100.1	Wheat	mitochondrion	34.51	30.68
TraesCS7A01G225500.1	Wheat	mitochondrion	34.1	30.37
GSMUA_Achr9P28140_001	Banana	cytosol	29.73	30.3
HORVU7Hr1G046920.1	Barley	mitochondrion	33.68	30.0
OQU89450	Sorghum	mitochondrion	36.38	29.81
Os08t0421850-00	Rice	mitochondrion	34.51	28.38
OQU80448	Sorghum	mitochondrion	33.26	27.92
HORVU6Hr1G091220.1	Barley	plastid	11.02	27.46
Zm00001d032264_P001	Maize	mitochondrion	32.22	27.05
EER92069	Sorghum	cytosol	32.02	26.78
HORVU6Hr1G008010.2	Barley	plastid	8.52	21.81

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BBM7	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc02g087200.1	EnsemblPlants:Solyc02g087200.1.1	UniParc:UPI0002767F29	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

U-box domain-containing protein 40 [Source:Projected from Arabidopsis thaliana (AT5G40140) UniProtKB/Swiss-Prot;Acc:Q9FL17]

Coordinates

chr2:-:49668259..49669704

Molecular Weight (calculated)

53070.9 Da

IEP (calculated)

7.525

GRAVY (calculated)

-0.153

Length

481 amino acids

Sequence
(BLAST)

001: MGTSKQRWRI SFHKSPSKQP PIPIEFVCPI SGSLMADPVI VSSGHTFERH CVHACKSLSF TPVLPDGSVP DFSTVIPNLA LKSTILNFCR SSFLDPPKPI
101: NFLTAENLVF TLKATRKPQD ATRFNGVRVM QTETELNRVP SHISMSSEES VTPRSGPTYY SSSSASDFET LNPNSFEEDE LLVKLKSSQI SEQEEAVISF
201: RKLTRTREET RFQLCTPRIL SALRVLITSR YVSVQVNSVA ALVNLSLENR NKVKILRSGI VPSLIDVLKS GFQESQEHVA GALFSLALDD QNKTAIGVLG
301: ALPPLLHALR SESERTRHDS ALALYHLTLV QSNRAKLVKL GAVQALLGMV KTGHMMGRIL LILCNLAASS EGRAAMLDGG AVECFVCMLR KGEFESESTR
401: ENCLAALYGL SHGGLRFKGL AKEAAAEELL IQVEEMGSER AKDKVRKILE VLRQKDEEEE VDWEKLLNSD DDISQARISS S

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.