Factsheet for TraesCS7B01G100600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G194900.1	Wheat	mitochondrion	91.35	92.05
HORVU7Hr1G039760.2	Barley	mitochondrion	91.54	90.84
TraesCS7D01G196500.1	Wheat	mitochondrion	87.31	87.98
Zm00001d044773_P001	Maize	cytosol	64.42	72.67
Os06t0238000-00	Rice	plasma membrane	71.92	72.2
KXG19688	Sorghum	plastid	70.19	67.84
GSMUA_Achr5P05220_001	Banana	mitochondrion	49.62	53.2
GSMUA_Achr3P06000_001	Banana	plastid	52.31	52.41
GSMUA_Achr9P14450_001	Banana	plastid	46.35	51.83
GSMUA_Achr10P...	Banana	cytosol	43.08	49.02
GSMUA_Achr7P19940_001	Banana	plastid	47.5	46.69
TraesCS5B01G200100.1	Wheat	mitochondrion	45.38	41.99
Bra018108.1-P	Field mustard	cytosol	25.96	41.41
CDY69575	Canola	cytosol	36.92	39.34
CDY24151	Canola	cytosol	35.77	39.32
TraesCS7B01G194100.1	Wheat	mitochondrion	40.77	39.19
CDY30728	Canola	cytosol	37.31	38.04
Solyc02g087200.1.1	Tomato	mitochondrion	34.23	37.01
PGSC0003DMT400001437	Potato	mitochondrion	34.42	36.83
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	38.46	36.76
KRH54443	Soybean	cytosol, mitochondrion	35.38	35.52
Bra029250.1-P	Field mustard	cytosol	37.69	35.51
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	35.58	35.37
KRH63473	Soybean	cytosol, plastid	35.58	35.24
CDY44594	Canola	cytosol, plastid	36.92	34.97
CDY36926	Canola	cytosol	34.23	34.63
AT5G40140.1	Thale cress	plastid	35.96	34.0
Bra025605.1-P	Field mustard	cytosol, plastid	36.73	33.99
CDY53109	Canola	cytosol, plastid	36.15	33.94
AT3G47820.1	Thale cress	cytosol	34.42	33.71
AT5G62560.1	Thale cress	cytosol	35.96	33.45
CDX87251	Canola	mitochondrion	36.15	33.39
Bra035890.1-P	Field mustard	mitochondrion, plastid	35.77	33.27
CDY16770	Canola	cytosol, mitochondrion	34.81	32.44
Solyc03g113870.1.1	Tomato	cytosol	32.5	32.01
Bra031875.1-P	Field mustard	mitochondrion	33.46	31.87
PGSC0003DMT400062863	Potato	cytosol	32.5	31.59
CDY37807	Canola	mitochondrion	33.27	31.57
KRG93403	Soybean	cytosol	34.23	31.34
AT5G65200.1	Thale cress	cytosol, mitochondrion	33.27	31.12
CDY33979	Canola	mitochondrion	32.88	30.92
KRH18582	Soybean	cytosol	34.23	29.32

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7B01G100600	EnsemblPlants:TraesCS7B01G100600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16453	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:115237068..115238947

Molecular Weight (calculated)

54570.4 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.079

Length

520 amino acids

Sequence
(BLAST)

001: MGTARLRWRP FTASSPASSA SSSPSSSFTT TVDPPAEFLC PISGTLMADP VIVPPGQTIE RACIQACAAL AFYPPAVAGL PSSPLVLIPN VALRSAILNW
101: CERLGLPHPS PLSLDTAGDI VRRLMPPRQG QRSQVNYGPP PQPQPSSVRT RNRYSVDYSA VDDFVPEPRQ TGGSLEEEIM AVLGADGASP AEQKATMASL
201: RQATRESKEM RTQLCTPRLL AALRPMLLSA DAGIQVNAAA AMVNLSLEAE NKVRIVRSGA VSPLVDVLRV GHPEARDHAA GAIYSLAVED ENRAAIGVLG
301: AIPPLLELFS SGGAGHRARR EAGMALYHVS LAGMNRSKIA RTPGVVRTLL ATAEARDRGN DSDADAAALR KLAVMILANL AGCPEGRAAL MDGGAVAAIV
401: GLMRSGSAAP GSAEEEYCIS ALYGMSRGSL RFRGLARAAG VEAALMPVAE SDGGVGRDMA RRTLRAMRGE DDEVALTASG ILGREWDDAS VVSEGMVSLR
501: RPQHHRSNYA GPSGSNTTQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.