Factsheet for AT5G40140.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53109	Canola	cytosol, plastid	84.0	83.39
Bra025605.1-P	Field mustard	cytosol, plastid	85.09	83.27
CDY44594	Canola	cytosol, plastid	82.55	82.7
Solyc02g087200.1.1	Tomato	mitochondrion	49.82	56.96
PGSC0003DMT400001437	Potato	mitochondrion	50.0	56.58
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	51.64	52.21
KRG93403	Soybean	cytosol	50.18	48.59
KRH18582	Soybean	cytosol	49.27	44.65
AT5G65200.1	Thale cress	cytosol, mitochondrion	45.09	44.6
AT3G47820.1	Thale cress	cytosol	40.18	41.62
AT5G62560.1	Thale cress	cytosol	41.09	40.43
GSMUA_Achr9P14450_001	Banana	plastid	32.0	37.85
GSMUA_Achr3P06000_001	Banana	plastid	34.73	36.8
GSMUA_Achr5P05220_001	Banana	mitochondrion	32.36	36.7
TraesCS7A01G194900.1	Wheat	mitochondrion	34.0	36.24
TraesCS7B01G100600.1	Wheat	mitochondrion	34.0	35.96
TraesCS7D01G196500.1	Wheat	mitochondrion	33.45	35.66
GSMUA_Achr10P...	Banana	cytosol	29.45	35.45
Os06t0238000-00	Rice	plasma membrane	33.09	35.14
HORVU7Hr1G039760.2	Barley	mitochondrion	33.27	34.92
GSMUA_Achr7P19940_001	Banana	plastid	33.27	34.59
HORVU6Hr1G043090.2	Barley	cytosol	22.55	34.07
Zm00001d044773_P001	Maize	cytosol	28.55	34.06
HORVU4Hr1G082630.1	Barley	plastid	8.55	33.57
TraesCS5A01G201400.1	Wheat	mitochondrion	32.91	32.61
Os06t0238200-00	Rice	plasma membrane	29.09	32.59
KXG19688	Sorghum	plastid	31.82	32.53
Zm00001d020358_P001	Maize	mitochondrion	32.91	32.26
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.36	32.07
Zm00001d005699_P001	Maize	mitochondrion	30.91	31.89
TraesCS5B01G200100.1	Wheat	mitochondrion	32.55	31.85
HORVU4Hr1G008170.1	Barley	cytosol	10.55	31.52
TraesCS5D01G207500.1	Wheat	mitochondrion	32.18	31.49
Os09t0386200-01	Rice	plasma membrane	31.27	31.44
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.64	30.64
TraesCS7D01G229000.1	Wheat	mitochondrion	29.82	30.48
TraesCS7A01G225500.1	Wheat	mitochondrion	29.27	29.81
GSMUA_Achr9P28140_001	Banana	cytosol	25.45	29.66
OQU89450	Sorghum	mitochondrion	31.45	29.47
TraesCS7B01G194100.1	Wheat	mitochondrion	28.91	29.39
HORVU7Hr1G046920.1	Barley	mitochondrion	28.55	29.07
OQU80448	Sorghum	mitochondrion	29.82	28.62
Zm00001d032264_P001	Maize	mitochondrion	28.91	27.75
Os08t0421850-00	Rice	mitochondrion	28.73	27.01
HORVU6Hr1G091220.1	Barley	plastid	9.45	26.94
EER92069	Sorghum	cytosol	25.64	24.52
HORVU6Hr1G008010.2	Barley	plastid	8.18	23.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:834011	ProteinID:AED94512.1	InterPro:ARM-like
InterPro:ARM-type_fold	ArrayExpress:AT5G40140	EnsemblPlantsGene:AT5G40140	RefSeq:AT5G40140	TAIR:AT5G40140	RefSeq:AT5G40140-TAIR-G
EnsemblPlants:AT5G40140.1	TAIR:AT5G40140.1	InterPro:Armadillo	ProteinID:BAB10895.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	RefSeq:NP_198830.1	PFAM:PF00514	PFAM:PF04564	PO:PO:0000037	PO:PO:0000293
PO:PO:0001078	PO:PO:0004507	PO:PO:0007611	PO:PO:0009009	PO:PO:0009010	PO:PO:0009031
PO:PO:0009046	PO:PO:0009047	PO:PO:0025022	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF157	UniProt:Q9FL17	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00001627D5	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]

Coordinates

chr5:+:16057079..16059303

Molecular Weight (calculated)

60221.8 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.159

Length

550 amino acids

Sequence
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.