Factsheet for TraesCS5B01G200100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G201400.1	Wheat	mitochondrion	89.5	90.63
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	89.15	90.27
TraesCS5D01G207500.1	Wheat	mitochondrion	83.1	83.1
HORVU6Hr1G091220.1	Barley	plastid	27.05	78.76
HORVU6Hr1G043090.2	Barley	cytosol	50.71	78.3
Os09t0386200-01	Rice	plasma membrane	71.35	73.31
HORVU4Hr1G008170.1	Barley	cytosol	23.49	71.74
HORVU4Hr1G082630.1	Barley	plastid	17.08	68.57
Zm00001d020358_P001	Maize	mitochondrion	65.84	65.95
Zm00001d005699_P001	Maize	mitochondrion	62.1	65.48
OQU89450	Sorghum	mitochondrion	68.15	65.25
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	19.39	63.01
HORVU6Hr1G008010.2	Barley	plastid	18.51	55.32
TraesCS7B01G194100.1	Wheat	mitochondrion	50.89	52.87
EER92069	Sorghum	cytosol	50.36	49.22
GSMUA_Achr5P05220_001	Banana	mitochondrion	42.35	49.07
GSMUA_Achr10P...	Banana	cytosol	38.79	47.7
GSMUA_Achr3P06000_001	Banana	plastid	42.35	45.86
TraesCS7B01G100600.1	Wheat	mitochondrion	41.99	45.38
GSMUA_Achr7P19940_001	Banana	plastid	42.53	45.18
GSMUA_Achr9P14450_001	Banana	plastid	37.19	44.95
Bra018108.1-P	Field mustard	cytosol	22.95	39.57
CDY69575	Canola	cytosol	32.38	37.3
Solyc02g087200.1.1	Tomato	mitochondrion	31.85	37.21
PGSC0003DMT400001437	Potato	mitochondrion	31.85	36.83
CDY24151	Canola	cytosol	30.96	36.79
CDY30728	Canola	cytosol	32.56	35.88
KRH54443	Soybean	cytosol, mitochondrion	32.92	35.71
KRH63473	Soybean	cytosol, plastid	33.27	35.62
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.38	34.8
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	33.63	34.74
CDY36926	Canola	cytosol	31.67	34.63
Bra029250.1-P	Field mustard	cytosol	33.45	34.06
AT5G65200.1	Thale cress	cytosol, mitochondrion	33.1	33.45
CDX87251	Canola	mitochondrion	33.27	33.21
AT3G47820.1	Thale cress	cytosol	31.14	32.96
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.56	32.74
AT5G62560.1	Thale cress	cytosol	32.56	32.74
CDY44594	Canola	cytosol, plastid	31.85	32.6
AT5G40140.1	Thale cress	plastid	31.85	32.55
CDY16770	Canola	cytosol, mitochondrion	32.03	32.26
Bra031875.1-P	Field mustard	mitochondrion	31.14	32.05
CDY37807	Canola	mitochondrion	31.14	31.93
Bra025605.1-P	Field mustard	cytosol, plastid	31.85	31.85
PGSC0003DMT400062863	Potato	cytosol	30.25	31.78
CDY53109	Canola	cytosol, plastid	31.32	31.77
CDY33979	Canola	mitochondrion	30.61	31.1
Solyc03g113870.1.1	Tomato	cytosol	29.18	31.06
KRG93403	Soybean	cytosol	30.25	29.93
KRH18582	Soybean	cytosol	30.61	28.34

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5B01G200100	EnsemblPlants:TraesCS5B01G200100.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16453
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:361004302..361005990

Molecular Weight (calculated)

58681.0 Da

IEP (calculated)

7.628

GRAVY (calculated)

-0.060

Length

562 amino acids

Sequence
(BLAST)

001: MGAARPRRWR FPFQRSAPSS PSSKSLPPAP YSPARSAAAA YPEPDRKWEE EAAPPEFVCP LSGALMADPV ILPSGQTYER ACLQACAELS FLPPGAGSGS
101: DALIPNSALK AAIGTWCARS GRAAPRPPSK EAVREAVLRA MPPAAAAAAE AKSVRTRRAA MASSSNSSYS SPASAASTST YTSSSEITPA EEDVAAKTVK
201: EAVKEVTQLE LPVDPLEDEV VAIVMDADED GEVAAALAVL RDATRESAER RLALCTPRLL AALRRVLLIP RHASARVDAT AALVNLSLEP ANKVRIVRAG
301: AVPALVEVLR SGGSVPEARE HAAGALFGLA LNEENRAAIG VLGAVPPLLD LLTSPAHHPR ARRDAGMAIY HLSLAAVNQS KVARFPGASK ALLSVASSAA
401: EPTPIRRLAL MVICNVGACS EGRASLMDAG AVAAVSGILL LPHDDATRLT LAELEEWCVA AIYALSRGSL RFRGLARAAG ADRALRRVAE EGTPGGVRRE
501: MARKTLRAMR GDLDEEADLT GSSLECGDGD DCGGSIVSDG LMSFRRRQRE VGASSCGNTA EF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.