CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63473	Soybean	cytosol, plastid	87.84	86.67
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	63.51	62.91
Bra031875.1-P	Field mustard	mitochondrion	57.53	54.58
CDY37807	Canola	mitochondrion	57.53	54.38
AT5G65200.1	Thale cress	cytosol, mitochondrion	58.3	54.32
CDY33979	Canola	mitochondrion	57.53	53.89
Bra018108.1-P	Field mustard	cytosol	33.78	53.68
CDY24151	Canola	cytosol	48.65	53.28
CDY69575	Canola	cytosol	49.23	52.25
CDY30728	Canola	cytosol	49.61	50.39
PGSC0003DMT400062863	Potato	cytosol	50.97	49.35
Solyc03g113870.1.1	Tomato	cytosol	49.23	48.3
CDY36926	Canola	cytosol	47.88	48.25
AT3G47820.1	Thale cress	cytosol	49.23	48.02
Bra029250.1-P	Field mustard	cytosol	50.39	47.28
AT5G62560.1	Thale cress	cytosol	50.19	46.51
CDY16770	Canola	cytosol, mitochondrion	50.0	46.42
CDX87251	Canola	mitochondrion	50.39	46.36
Bra035890.1-P	Field mustard	mitochondrion, plastid	49.61	45.98
KRG93403	Soybean	cytosol	50.0	45.6
KRH18582	Soybean	cytosol	50.58	43.16
GSMUA_Achr3P06000_001	Banana	plastid	38.22	38.15
GSMUA_Achr10P...	Banana	cytosol	33.59	38.07
GSMUA_Achr5P05220_001	Banana	mitochondrion	35.52	37.94
GSMUA_Achr9P14450_001	Banana	plastid	33.01	36.77
Zm00001d044773_P001	Maize	cytosol	32.43	36.44
TraesCS7D01G196500.1	Wheat	mitochondrion	35.52	35.66
Os06t0238000-00	Rice	plasma membrane	35.52	35.52
TraesCS7B01G100600.1	Wheat	mitochondrion	35.52	35.38
GSMUA_Achr7P19940_001	Banana	plastid	36.1	35.35
TraesCS7A01G194900.1	Wheat	mitochondrion	34.75	34.88
HORVU7Hr1G039760.2	Barley	mitochondrion	35.14	34.73
HORVU6Hr1G043090.2	Barley	cytosol	23.94	34.07
KXG19688	Sorghum	plastid	34.94	33.64
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	35.71	33.33
TraesCS5A01G201400.1	Wheat	mitochondrion	35.71	33.33
HORVU4Hr1G008170.1	Barley	cytosol	11.78	33.15
TraesCS5B01G200100.1	Wheat	mitochondrion	35.71	32.92
Os09t0386200-01	Rice	plasma membrane	34.75	32.91
Zm00001d005699_P001	Maize	mitochondrion	33.78	32.83
Zm00001d020358_P001	Maize	mitochondrion	35.52	32.8
TraesCS5D01G207500.1	Wheat	mitochondrion	35.52	32.74
TraesCS7D01G229000.1	Wheat	mitochondrion	33.59	32.34
TraesCS7B01G194100.1	Wheat	mitochondrion	33.2	31.79
OQU89450	Sorghum	mitochondrion	35.91	31.69
HORVU7Hr1G046920.1	Barley	mitochondrion	33.01	31.67
Os06t0238200-00	Rice	plasma membrane	29.92	31.57
TraesCS7A01G225500.1	Wheat	mitochondrion	32.82	31.48
HORVU4Hr1G082630.1	Barley	plastid	8.49	31.43
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.42	31.21
GSMUA_Achr9P28140_001	Banana	cytosol	27.8	30.51
HORVU6Hr1G091220.1	Barley	plastid	11.0	29.53
Zm00001d032264_P001	Maize	mitochondrion	32.05	28.97
OQU80448	Sorghum	mitochondrion	31.66	28.62
Os08t0421850-00	Rice	mitochondrion	31.08	27.52
EER92069	Sorghum	cytosol	29.54	26.61
HORVU6Hr1G008010.2	Barley	plastid	9.65	26.6

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100815075	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02003523	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_06G185400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1KCJ8	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRH54443	ProteinID:KRH54443	ProteinID:KRH54443.1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00023392E8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:16107862..16110852

Molecular Weight (calculated)

56706.0 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.179

Length

518 amino acids

Sequence
(BLAST)

001: MGGNGKHRWK FSFHRSSTHP PKEFTCPISG SLMSDPVVVA SGQTFERLAV QLCKDLNFSP KLDDGTRPDF STLIPNLAIK TTILHWCDNA RTQHPRPPDY
101: ASLQRLVLEQ KENDRVRVSE MELLNAVADL PPVIFSHAAT ELGPRVNHFN SGSSSEQESV IIPSSPGTPL PLTIRPTCFS SSSSSSCEIE IENSNTPASE
201: EEEGLLKKLK SNEVFEQEEG VIALRKITRN KEDARVSLCT PRVLLALRGL IASRYGVVQV NAVASLVNLS LEKQNKVKIV RSGFVPFLID VLKGGLGESQ
301: EHAAGALFSL ALDDDNKMAI GVLGALHPLM HALRAESERT RHDSALALYH LSLVQSNRMK LVKLGVVPTL LSMVVAGNLA SRVLLILCNL AVCTEGRTAM
401: LDANAVEILV SLLRGNELDS EATRENCVAA LYALSHRSLR FKGLAKEARV AEVLKEIEET GTERAREKAR KVLHMLRTVG DGDGDEIDEF YDSAGLTRNR
501: YRAGAARNSD NLVNTTTF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.