Factsheet for GSMUA_Achr5P05220_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06000_001	Banana	plastid	65.15	60.89
GSMUA_Achr9P14450_001	Banana	plastid	55.46	57.85
Zm00001d044773_P001	Maize	cytosol	49.28	51.84
TraesCS7D01G196500.1	Wheat	mitochondrion	54.02	50.78
GSMUA_Achr10P...	Banana	cytosol	47.22	50.11
TraesCS7B01G100600.1	Wheat	mitochondrion	53.2	49.62
TraesCS7A01G194900.1	Wheat	mitochondrion	52.58	49.42
HORVU7Hr1G039760.2	Barley	mitochondrion	52.99	49.05
Os06t0238000-00	Rice	plasma membrane	51.34	48.07
KXG19688	Sorghum	plastid	52.16	47.03
GSMUA_Achr7P19940_001	Banana	plastid	50.72	46.5
HORVU6Hr1G043090.2	Barley	cytosol	34.23	45.6
HORVU4Hr1G008170.1	Barley	cytosol	17.11	45.11
Zm00001d005699_P001	Maize	mitochondrion	47.84	43.53
HORVU6Hr1G091220.1	Barley	plastid	17.11	43.01
Os09t0386200-01	Rice	plasma membrane	48.25	42.78
TraesCS5D01G207500.1	Wheat	mitochondrion	49.07	42.35
TraesCS5B01G200100.1	Wheat	mitochondrion	49.07	42.35
TraesCS5A01G201400.1	Wheat	mitochondrion	48.04	41.98
Zm00001d020358_P001	Maize	mitochondrion	48.25	41.71
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	47.63	41.62
Bra018108.1-P	Field mustard	cytosol	27.63	41.1
Os06t0238200-00	Rice	plasma membrane	41.44	40.94
HORVU4Hr1G082630.1	Barley	plastid	11.75	40.71
OQU89450	Sorghum	mitochondrion	48.45	40.03
TraesCS7D01G229000.1	Wheat	mitochondrion	42.47	38.29
TraesCS7A01G225500.1	Wheat	mitochondrion	42.06	37.78
TraesCS7B01G194100.1	Wheat	mitochondrion	42.06	37.71
HORVU7Hr1G046920.1	Barley	mitochondrion	41.44	37.22
CDY24151	Canola	cytosol	35.46	36.36
Solyc02g087200.1.1	Tomato	mitochondrion	35.88	36.17
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	12.78	35.84
CDY69575	Canola	cytosol	35.88	35.66
PGSC0003DMT400001437	Potato	mitochondrion	35.67	35.6
KRH54443	Soybean	cytosol, mitochondrion	37.94	35.52
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	39.38	35.11
HORVU6Hr1G008010.2	Barley	plastid	13.61	35.11
CDY30728	Canola	cytosol	36.7	34.9
KRH63473	Soybean	cytosol, plastid	37.53	34.67
GSMUA_Achr9P28140_001	Banana	cytosol	33.61	34.53
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	37.11	34.42
Os08t0421850-00	Rice	mitochondrion	41.44	34.36
Zm00001d032264_P001	Maize	mitochondrion	40.0	33.86
OQU80448	Sorghum	mitochondrion	39.59	33.51
CDY44594	Canola	cytosol, plastid	37.73	33.33
CDY36926	Canola	cytosol	35.05	33.07
CDY53109	Canola	cytosol, plastid	37.32	32.67
Bra025605.1-P	Field mustard	cytosol, plastid	37.53	32.38
AT5G40140.1	Thale cress	plastid	36.7	32.36
Bra029250.1-P	Field mustard	cytosol	36.7	32.25
Bra031875.1-P	Field mustard	mitochondrion	35.88	31.87
Bra035890.1-P	Field mustard	mitochondrion, plastid	36.7	31.84
AT5G62560.1	Thale cress	cytosol	36.7	31.84
AT3G47820.1	Thale cress	cytosol	34.85	31.83
EER92069	Sorghum	cytosol	37.73	31.83
CDY37807	Canola	mitochondrion	35.67	31.57
CDY16770	Canola	cytosol, mitochondrion	36.29	31.54
AT5G65200.1	Thale cress	cytosol, mitochondrion	35.88	31.3
CDX87251	Canola	mitochondrion	35.88	30.91
CDY33979	Canola	mitochondrion	35.05	30.74
Solyc03g113870.1.1	Tomato	cytosol	32.78	30.11
PGSC0003DMT400062863	Potato	cytosol	33.2	30.09
KRG93403	Soybean	cytosol	34.43	29.4
KRH18582	Soybean	cytosol	34.43	27.51

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr5G05220_001	EnsemblPlants:GSMUA_Achr5P05220_001	EnsemblPlants:GSMUA_Achr5T05220_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0SVV1	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000295CCB9
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative U-box domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr5G05220_001]

Coordinates

chr5:+:3854463..3856370

Molecular Weight (calculated)

51151.7 Da

IEP (calculated)

6.632

GRAVY (calculated)

0.012

Length

485 amino acids

Sequence
(BLAST)

001: MGNHKSFWNF SKLHRRSPSS ALPASSSTTA AAEMPMEFLC PISCSLMADP VIVPPSGHTF ERSCIQACAD LAFSPPGLAV DLGLSPLVLI PNVALKSAIL
101: RGGRGEVFRG AAVFVEEASK EPPPPPQVND PTASDLAPSP TAEIDVSEEE VVIKLMSKDM FEQESTVVLL RQATRESLNS RIALCTPRLL AALRPMLLTH
201: STAIQIDATA ALVNLSLEPA NRVRIVKSGT VLPLVEVLEG GHPEARDHAA GALFSLALED ENRAAIGVLG AIPPLLNLFS MPSPDGARAR RDAGMALYYL
301: SLASANRSKI ARAPGAVRAL LSVASEKEET PPSQGPSLVR LAMMVVCNLA SSTEGRAALM DGGAVGRVVS LMSSPSAAVE EYCVSALYGM SRGSLRFRGL
401: ARSAGAERVL MRVAEGSGGG GDMRQTMAKK TLRALRGEDD DEAAASPPMG FLADEDGSVV SEGMMSFRRR PNQHGNSARL KTAEF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.