Factsheet for HORVU7Hr1G046920.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G194100.1	Wheat	mitochondrion	90.37	90.2
TraesCS7A01G225500.1	Wheat	mitochondrion	89.26	89.26
TraesCS7D01G229000.1	Wheat	mitochondrion	86.85	87.17
Os08t0421850-00	Rice	mitochondrion	63.52	58.63
OQU80448	Sorghum	mitochondrion	58.89	55.5
Zm00001d032264_P001	Maize	mitochondrion	57.59	54.28
HORVU4Hr1G008170.1	Barley	cytosol	18.33	53.8
HORVU4Hr1G082630.1	Barley	plastid	13.89	53.57
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	52.78	51.35
HORVU6Hr1G043090.2	Barley	cytosol	34.26	50.82
HORVU6Hr1G091220.1	Barley	plastid	16.85	47.15
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	14.26	44.51
GSMUA_Achr7P19940_001	Banana	plastid	42.04	42.91
GSMUA_Achr5P05220_001	Banana	mitochondrion	37.22	41.44
GSMUA_Achr10P...	Banana	cytosol	35.0	41.36
HORVU6Hr1G008010.2	Barley	plastid	14.26	40.96
GSMUA_Achr3P06000_001	Banana	plastid	38.89	40.46
HORVU7Hr1G039760.2	Barley	mitochondrion	38.89	40.08
GSMUA_Achr9P14450_001	Banana	plastid	33.7	39.14
Bra018108.1-P	Field mustard	cytosol	22.04	36.5
CDY24151	Canola	cytosol	30.74	35.1
CDY69575	Canola	cytosol	31.48	34.84
CDY30728	Canola	cytosol	31.85	33.73
Solyc02g087200.1.1	Tomato	mitochondrion	30.0	33.68
PGSC0003DMT400001437	Potato	mitochondrion	30.19	33.54
KRH63473	Soybean	cytosol, plastid	32.41	33.33
KRH54443	Soybean	cytosol, mitochondrion	31.67	33.01
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	31.67	32.7
CDY36926	Canola	cytosol	30.37	31.91
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	32.04	31.8
Bra029250.1-P	Field mustard	cytosol	31.85	31.16
AT3G47820.1	Thale cress	cytosol	30.19	30.7
AT5G62560.1	Thale cress	cytosol	31.67	30.59
PGSC0003DMT400062863	Potato	cytosol	30.19	30.47
Solyc03g113870.1.1	Tomato	cytosol	29.26	29.92
Bra035890.1-P	Field mustard	mitochondrion, plastid	30.93	29.87
CDY16770	Canola	cytosol, mitochondrion	30.74	29.75
CDY44594	Canola	cytosol, plastid	30.0	29.51
CDX87251	Canola	mitochondrion	30.74	29.48
Bra031875.1-P	Field mustard	mitochondrion	29.63	29.3
CDY53109	Canola	cytosol, plastid	29.81	29.06
CDY37807	Canola	mitochondrion	29.44	29.01
CDY33979	Canola	mitochondrion	29.63	28.93
AT5G65200.1	Thale cress	cytosol, mitochondrion	29.63	28.78
Bra025605.1-P	Field mustard	cytosol, plastid	29.81	28.65
AT5G40140.1	Thale cress	plastid	29.07	28.55
KRG93403	Soybean	cytosol	27.22	25.88
KRH18582	Soybean	cytosol	27.78	24.71

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:AK354559	EMBL:AK365726	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	UniProt:F2CSF7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU7Hr1G046920	EnsemblPlants:HORVU7Hr1G046920.1	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF221	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002004663	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F2CSF7]

Coordinates

chrchr7H:+:155292351..155294342

Molecular Weight (calculated)

56279.4 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.076

Length

540 amino acids

Sequence
(BLAST)

001: MGAARAWRWK LLPFHSKPPP PPPPSVPATL SPVDKEENVP REFLCPILGA PMSDPVILPS GRTYERACIQ ACAELFVSPP GLEGDSPASG GVVPIPNDAL
101: GAAIRTWSAR SGRAPPAAPS AAAAREAVLR AVPTPRPPGR SSSNLSCSSR ASAASTSSSS SRSSSEMTAV EQLEMACAKE TESLRVGEGE EEAGQLTVKA
201: VRGGDEWEVD AAMAALRRAT RESAPRRRAL CVPQLLAALR RVLLSARHSA AARADATAAL ANLSLEPENR VPIVRAGVLP ALVEVAGLGA AAPEACEHAA
301: GALFGLALHE GNRAAIGVLG ALPPLLSLLT TGDHAPRARR DAGMALLHLS LAAVNQSKLA RAPGAAKNLL SISSDSNEPL PIRRLALMVI CNIAACAEGR
401: TALMDAGAVA TFSVILSNDA HRSELQEWCV AALYDMSKGS PRFRGLARAA GADRPLILIA EQADPGVHKD MARKALRAML GLGDINGGGL HDFCNSERND
501: DDSGTMSSSL PVRRRRAASW GAPPASKLSS SHHWRSVCID

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.