Factsheet for GSMUA_Achr3P06000_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14450_001	Banana	plastid	62.81	70.11
GSMUA_Achr5P05220_001	Banana	mitochondrion	60.89	65.15
Zm00001d044773_P001	Maize	cytosol	47.98	54.01
TraesCS7D01G196500.1	Wheat	mitochondrion	52.79	53.1
TraesCS7B01G100600.1	Wheat	mitochondrion	52.41	52.31
TraesCS7A01G194900.1	Wheat	mitochondrion	51.83	52.13
GSMUA_Achr10P...	Banana	cytosol	45.86	52.08
Os06t0238000-00	Rice	plasma membrane	51.83	51.93
GSMUA_Achr7P19940_001	Banana	plastid	52.02	51.04
HORVU7Hr1G039760.2	Barley	mitochondrion	51.25	50.76
KXG19688	Sorghum	plastid	51.64	49.81
HORVU6Hr1G043090.2	Barley	cytosol	33.14	47.25
HORVU4Hr1G008170.1	Barley	cytosol	15.99	45.11
Zm00001d005699_P001	Maize	mitochondrion	45.66	44.47
TraesCS5A01G201400.1	Wheat	mitochondrion	46.63	43.6
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	46.63	43.6
HORVU6Hr1G091220.1	Barley	plastid	16.18	43.52
Os09t0386200-01	Rice	plasma membrane	45.47	43.14
HORVU4Hr1G082630.1	Barley	plastid	11.56	42.86
TraesCS5D01G207500.1	Wheat	mitochondrion	46.24	42.7
Os06t0238200-00	Rice	plasma membrane	40.27	42.57
TraesCS5B01G200100.1	Wheat	mitochondrion	45.86	42.35
Zm00001d020358_P001	Maize	mitochondrion	45.66	42.25
OQU89450	Sorghum	mitochondrion	46.82	41.4
Bra018108.1-P	Field mustard	cytosol	25.43	40.49
TraesCS7B01G194100.1	Wheat	mitochondrion	41.81	40.11
TraesCS7A01G225500.1	Wheat	mitochondrion	41.62	40.0
TraesCS7D01G229000.1	Wheat	mitochondrion	41.04	39.59
HORVU7Hr1G046920.1	Barley	mitochondrion	40.46	38.89
Solyc02g087200.1.1	Tomato	mitochondrion	35.65	38.46
KRH54443	Soybean	cytosol, mitochondrion	38.15	38.22
CDY24151	Canola	cytosol	34.68	38.05
PGSC0003DMT400001437	Potato	mitochondrion	35.45	37.86
CDY69575	Canola	cytosol	35.26	37.5
KRH63473	Soybean	cytosol, plastid	37.57	37.14
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	38.54	36.76
HORVU6Hr1G008010.2	Barley	plastid	13.29	36.7
CDY30728	Canola	cytosol	36.03	36.67
CDY44594	Canola	cytosol, plastid	38.73	36.61
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	36.61	36.33
GSMUA_Achr9P28140_001	Banana	cytosol	32.95	36.23
Os08t0421850-00	Rice	mitochondrion	40.46	35.9
OQU80448	Sorghum	mitochondrion	39.5	35.78
Bra025605.1-P	Field mustard	cytosol, plastid	38.54	35.59
CDY53109	Canola	cytosol, plastid	37.96	35.56
Zm00001d032264_P001	Maize	mitochondrion	38.54	34.9
AT5G40140.1	Thale cress	plastid	36.8	34.73
AT5G65200.1	Thale cress	cytosol, mitochondrion	37.19	34.71
CDY36926	Canola	cytosol	34.3	34.63
Bra031875.1-P	Field mustard	mitochondrion	36.42	34.62
CDY37807	Canola	mitochondrion	36.22	34.31
EER92069	Sorghum	cytosol	37.96	34.26
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.37	34.1
AT3G47820.1	Thale cress	cytosol	34.87	34.09
KRG93403	Soybean	cytosol	37.19	33.98
CDY33979	Canola	mitochondrion	36.03	33.82
Bra029250.1-P	Field mustard	cytosol	35.84	33.7
AT5G62560.1	Thale cress	cytosol	35.65	33.09
CDY16770	Canola	cytosol, mitochondrion	35.26	32.8
Bra035890.1-P	Field mustard	mitochondrion, plastid	35.26	32.74
CDX87251	Canola	mitochondrion	35.26	32.5
PGSC0003DMT400062863	Potato	cytosol	32.56	31.59
Solyc03g113870.1.1	Tomato	cytosol	31.98	31.44
KRH18582	Soybean	cytosol	35.84	30.64

Protein Annotations

Gene3D:1.25.10.110	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G06000_001
EnsemblPlants:GSMUA_Achr3P06000_001	EnsemblPlants:GSMUA_Achr3T06000_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	UniProt:M0SC68
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002956C68	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative U-box domain-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06000_001]

Coordinates

chr3:-:4040242..4042320

Molecular Weight (calculated)

55210.4 Da

IEP (calculated)

7.678

GRAVY (calculated)

-0.020

Length

519 amino acids

Sequence
(BLAST)

001: MGSRKPFWRF SNDHRSCTSA SSTSPVSSIT AAEMAVEFLC PISRSLMADP VIVPPSGHTF ERSCVQACAD LAFSPPGLSL ELSPSPLVLI PNVALKSAIL
101: SWCQSIGVPP PQPMPPDAAR ALVRSLMPPS SNPRPSPPHA ADFWQQIDET GPEFEGGDES QRPFRFLRSH QESSSLLFAA LNLVGVLLSE QESAVVLLRQ
201: ATKENRKRRI DLCTPRLLAA LRSMLLSSSA AVQISATASL VNLSLEPENR VRIVRSGAVP PLVEVLEGGY PEARYHAAGA LFSLAIADEN RAAIGVLGAI
301: PPLLDLFSVP SADGLRARRD AGMALYYLSL AGANRSKIAR APGVVRALLS VASEREVSPG GTPSTTQGPG LARLAMMVVC NLAGCNEGRA ALMDGGAVTS
401: VVSLMRSPAA AAVEEYCVAA LYGMSRGSLR FRGLARSASA EPVLTRVAEG WVSGGEMRRE MAKKTLRALR GDDEDDAEPS LSMGFPADDD GSIVSEGMMS
501: IRRRPNYYAN PPRMNSAEF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.