Factsheet for AT5G65200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031875.1-P	Field mustard	mitochondrion	78.96	80.4
CDY37807	Canola	mitochondrion	79.14	80.29
CDY33979	Canola	mitochondrion	79.32	79.75
KRH63473	Soybean	cytosol, plastid	57.01	60.38
KRH54443	Soybean	cytosol, mitochondrion	54.32	58.3
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	53.24	56.6
AT3G47820.1	Thale cress	cytosol	49.82	52.17
AT5G62560.1	Thale cress	cytosol	50.0	49.73
Solyc03g113870.1.1	Tomato	cytosol	45.68	48.11
PGSC0003DMT400062863	Potato	cytosol	46.04	47.85
AT5G40140.1	Thale cress	plastid	44.6	45.09
GSMUA_Achr3P06000_001	Banana	plastid	34.71	37.19
HORVU4Hr1G082630.1	Barley	plastid	9.35	37.14
GSMUA_Achr9P14450_001	Banana	plastid	30.76	36.77
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.3	35.88
HORVU4Hr1G008170.1	Barley	cytosol	11.69	35.33
GSMUA_Achr10P...	Banana	cytosol	28.96	35.23
HORVU6Hr1G043090.2	Barley	cytosol	23.02	35.16
GSMUA_Achr7P19940_001	Banana	plastid	32.73	34.4
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	33.81	33.87
HORVU6Hr1G091220.1	Barley	plastid	11.69	33.68
Os06t0238000-00	Rice	plasma membrane	31.3	33.59
TraesCS7A01G194900.1	Wheat	mitochondrion	31.12	33.53
TraesCS7D01G196500.1	Wheat	mitochondrion	30.94	33.33
TraesCS5A01G201400.1	Wheat	mitochondrion	33.27	33.33
TraesCS7B01G100600.1	Wheat	mitochondrion	31.12	33.27
Zm00001d044773_P001	Maize	cytosol	27.52	33.19
TraesCS5B01G200100.1	Wheat	mitochondrion	33.45	33.1
HORVU7Hr1G039760.2	Barley	mitochondrion	30.76	32.63
Os06t0238200-00	Rice	plasma membrane	28.78	32.59
Zm00001d005699_P001	Maize	mitochondrion	31.12	32.46
HORVU6Hr1G008010.2	Barley	plastid	10.97	32.45
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.07	32.37
Zm00001d020358_P001	Maize	mitochondrion	32.37	32.09
TraesCS5D01G207500.1	Wheat	mitochondrion	32.37	32.03
Os09t0386200-01	Rice	plasma membrane	31.47	31.99
OQU89450	Sorghum	mitochondrion	33.09	31.35
KXG19688	Sorghum	plastid	30.04	31.04
TraesCS7D01G229000.1	Wheat	mitochondrion	30.04	31.04
TraesCS7B01G194100.1	Wheat	mitochondrion	30.04	30.87
HORVU7Hr1G046920.1	Barley	mitochondrion	28.78	29.63
TraesCS7A01G225500.1	Wheat	mitochondrion	28.6	29.44
Zm00001d032264_P001	Maize	mitochondrion	29.14	28.27
OQU80448	Sorghum	mitochondrion	28.24	27.4
Os08t0421850-00	Rice	mitochondrion	28.6	27.18
GSMUA_Achr9P28140_001	Banana	cytosol	23.02	27.12
EER92069	Sorghum	cytosol	27.52	26.61

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:836643	ProteinID:AED98016.1	InterPro:ARM-like
InterPro:ARM-type_fold	ArrayExpress:AT5G65200	EnsemblPlantsGene:AT5G65200	RefSeq:AT5G65200	TAIR:AT5G65200	RefSeq:AT5G65200-TAIR-G
EnsemblPlants:AT5G65200.1	TAIR:AT5G65200.1	InterPro:Armadillo	Unigene:At.49809	ProteinID:BAB11655.1	EMBL:BT015352
EMBL:BT015720	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
RefSeq:NP_201323.1	PFAM:PF00514	PFAM:PF04564	PO:PO:0000293	PO:PO:0009047	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	Symbol:PUB38	UniProt:Q9FJP6	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00000A8C0F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]

Coordinates

chr5:-:26048065..26050046

Molecular Weight (calculated)

61781.4 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.372

Length

556 amino acids

Sequence
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.