Factsheet for Os06t0238200-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0238000-00	Rice	plasma membrane	48.07	45.56
GSMUA_Achr5P05220_001	Banana	mitochondrion	40.94	41.44
GSMUA_Achr10P...	Banana	cytosol	37.68	40.48
GSMUA_Achr3P06000_001	Banana	plastid	42.57	40.27
GSMUA_Achr9P14450_001	Banana	plastid	37.07	39.14
GSMUA_Achr7P19940_001	Banana	plastid	41.55	38.56
Bra018108.1-P	Field mustard	cytosol	24.03	36.2
Os09t0386200-01	Rice	plasma membrane	40.12	36.01
CDY69575	Canola	cytosol	34.42	34.63
CDY24151	Canola	cytosol	32.59	33.83
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	35.23	33.08
Solyc02g087200.1.1	Tomato	mitochondrion	32.38	33.06
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	36.25	32.72
PGSC0003DMT400001437	Potato	mitochondrion	32.38	32.72
CDY30728	Canola	cytosol	33.81	32.55
Os08t0421850-00	Rice	mitochondrion	38.7	32.48
CDY36926	Canola	cytosol	33.2	31.71
Bra029250.1-P	Field mustard	cytosol	34.42	30.62
AT3G47820.1	Thale cress	cytosol	32.59	30.13
CDY44594	Canola	cytosol, plastid	33.6	30.05
CDY53109	Canola	cytosol, plastid	33.81	29.96
KRH54443	Soybean	cytosol, mitochondrion	31.57	29.92
Bra025605.1-P	Field mustard	cytosol, plastid	34.01	29.72
AT5G62560.1	Thale cress	cytosol	33.81	29.7
KRH63473	Soybean	cytosol, plastid	31.57	29.52
Bra031875.1-P	Field mustard	mitochondrion	32.79	29.49
CDY37807	Canola	mitochondrion	32.59	29.2
AT5G40140.1	Thale cress	plastid	32.59	29.09
CDY16770	Canola	cytosol, mitochondrion	32.99	29.03
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.79	28.8
AT5G65200.1	Thale cress	cytosol, mitochondrion	32.59	28.78
CDX87251	Canola	mitochondrion	32.79	28.6
Solyc03g113870.1.1	Tomato	cytosol	30.55	28.41
CDY33979	Canola	mitochondrion	31.98	28.39
PGSC0003DMT400062863	Potato	cytosol	30.75	28.22
KRG93403	Soybean	cytosol	30.55	26.41
KRH18582	Soybean	cytosol	30.75	24.88

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:107276525	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAD37863.1	ProteinID:BAD37900.1	ProteinID:BAS96974.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlantsGene:Os06g0238200	EnsemblPlants:Os06t0238200-00	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	UniProt:Q67VB9	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00004263D4	InterPro:Ubox_domain	RefSeq:XP_015640866.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

plant U-box-containing protein 19, U-box protein 19Similar to ubiquitin-protein ligase. (Os06t0238200-00)

Coordinates

chr6:+:7186601..7188076

Molecular Weight (calculated)

50666.1 Da

IEP (calculated)

6.862

GRAVY (calculated)

0.092

Length

491 amino acids

Sequence
(BLAST)

001: MAGAAAAAAA TPPEFVCPIS GELMADPVIV PSGETFERGC VEACVALGFT PAALPLSVDL AASPPPALIP NANLRKAISS YCDRVGLPRP LAVSPEEARG
101: IVRHLMAMRE PGRAGGVNGE RFESSSSSSP EFAALGLTLE EAVLVRLLDD EPSRQEGALE ALKQTLRGGE NGVRRALCTP RLLDGLRRLM GSGHEGVRVS
201: AAACVVNLSL EPANRVQLVR AELVPVLVGL LAAASPELRD HAAGAVYSLS IEERNRIPIG VLGAVPPLLR LLASAADGDR ARRDAGMALY YLSLDEMNRS
301: RLARSAGAVA ALVGAAGDAA LRRPALMVMA NLAGCGEGRE ALIDGGAVAA VAGLMRRATV APGSTEEEYC LSALHGMSRG NVRFGGLARA AGAGEVLRRV
401: AEGPGGGVRR DVAWRTLRAV GGVAAAATGE SLYGGEDAAA AAPWMDDVSV MSEAMAMPQF PRRLVEHAHA HGAPPRSNTT ALDRLRQAPN G

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.