CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018108.1-P	Field mustard	cytosol	61.87	97.55
CDY24151	Canola	cytosol	80.54	87.53
AT3G47820.1	Thale cress	cytosol	77.43	74.95
CDY69575	Canola	cytosol	65.76	69.26
CDY30728	Canola	cytosol	66.54	67.06
CDX87251	Canola	mitochondrion	69.07	63.06
CDY16770	Canola	cytosol, mitochondrion	67.32	62.01
CDY37807	Canola	mitochondrion	52.33	49.09
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	49.81	48.95
CDY33979	Canola	mitochondrion	52.33	48.64
KRH54443	Soybean	cytosol, mitochondrion	48.25	47.88
KRH63473	Soybean	cytosol, plastid	48.83	47.81
Solyc03g113870.1.1	Tomato	cytosol	42.41	41.29
PGSC0003DMT400062863	Potato	cytosol	42.61	40.93
CDY44594	Canola	cytosol, plastid	43.58	40.8
CDY53109	Canola	cytosol, plastid	43.19	40.07
GSMUA_Achr10P...	Banana	cytosol	32.49	36.54
Zm00001d044773_P001	Maize	cytosol	32.68	36.44
GSMUA_Achr9P14450_001	Banana	plastid	32.1	35.48
GSMUA_Achr5P05220_001	Banana	mitochondrion	33.07	35.05
Os06t0238000-00	Rice	plasma membrane	34.63	34.36
TraesCS7D01G196500.1	Wheat	mitochondrion	34.44	34.3
GSMUA_Achr3P06000_001	Banana	plastid	34.63	34.3
TraesCS7B01G100600.1	Wheat	mitochondrion	34.63	34.23
TraesCS7A01G194900.1	Wheat	mitochondrion	33.85	33.72
GSMUA_Achr7P19940_001	Banana	plastid	34.63	33.65
HORVU7Hr1G039760.2	Barley	mitochondrion	34.24	33.59
Os06t0238200-00	Rice	plasma membrane	31.71	33.2
HORVU4Hr1G008170.1	Barley	cytosol	11.87	33.15
TraesCS5A01G201400.1	Wheat	mitochondrion	35.41	32.79
KXG19688	Sorghum	plastid	34.24	32.71
HORVU6Hr1G043090.2	Barley	cytosol	23.15	32.69
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	34.44	31.89
TraesCS5B01G200100.1	Wheat	mitochondrion	34.63	31.67
Zm00001d005699_P001	Maize	mitochondrion	32.68	31.52
TraesCS5D01G207500.1	Wheat	mitochondrion	33.85	30.96
TraesCS7D01G229000.1	Wheat	mitochondrion	32.3	30.86
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.31	30.64
Os09t0386200-01	Rice	plasma membrane	32.49	30.53
TraesCS7B01G194100.1	Wheat	mitochondrion	32.1	30.5
HORVU7Hr1G046920.1	Barley	mitochondrion	31.91	30.37
Zm00001d020358_P001	Maize	mitochondrion	33.07	30.3
TraesCS7A01G225500.1	Wheat	mitochondrion	31.52	30.0
OQU89450	Sorghum	mitochondrion	34.24	29.98
Os08t0421850-00	Rice	mitochondrion	33.85	29.74
HORVU4Hr1G082630.1	Barley	plastid	7.98	29.29
GSMUA_Achr9P28140_001	Banana	cytosol	26.65	29.03
OQU80448	Sorghum	mitochondrion	31.91	28.62
Zm00001d032264_P001	Maize	mitochondrion	31.13	27.92
HORVU6Hr1G091220.1	Barley	plastid	9.34	24.87
EER92069	Sorghum	cytosol	27.63	24.7
HORVU6Hr1G008010.2	Barley	plastid	8.95	24.47

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078HGM8	UniProt:A0A078HGM8	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY36926	ProteinID:CDY36926	ProteinID:CDY36926.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00063067001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE987B	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA06g17110DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HGM8]

Coordinates

chrLK032387:-:172254..173798

Molecular Weight (calculated)

55670.5 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.215

Length

514 amino acids

Sequence
(BLAST)

001: MPQNNPGETP TEFLCPITGF LMSDPVVVAS GQTFERISVQ VCRNLGFAPK LHDGSQPDLS TVIPNLAMKS TILSWCNRKK VEHPRPPDYA YVEGVVRARM
101: DKEPGTGNRV ARSEILPPVA ENSPSDYDSV MGAIRARSRN SISSSTSLPL HHHRPVTYSS SSEIFAGAEN PNPIQSSFST SDYSSFPPMS EEEEEIYNKL
201: RSANTVDHEQ GLILLRKTTR SSESSRISLC TERLLSLLRS LIVSRYNIVQ TNAAASLVNL SLEKPNKLKI VRSGFVPLLI DVLKSGSTEA QEHVIGALFS
301: LAVEEENKMV IGVLGAVEPL LHALRSSESE RARQDAALAL YHLSLIPNNR TRLVRAGAVP IMLSMLRSGE SASRILLLLC NLAACSEGKG AMLDGNAVAI
401: LVGKLREGGA DSEAARENCV GALLTLSVGN MRFRGLASEA GAEAIMTDIV ESEGGSERLK EKAGKILQAI RGGEREFGEG AEAREWNRML EASGLSRSQF
501: QGGQKEGFAY SSQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.