Factsheet for GSMUA_Achr9P14450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06000_001	Banana	plastid	70.11	62.81
GSMUA_Achr5P05220_001	Banana	mitochondrion	57.85	55.46
GSMUA_Achr10P...	Banana	cytosol	48.39	49.23
Zm00001d044773_P001	Maize	cytosol	47.31	47.72
TraesCS7D01G196500.1	Wheat	mitochondrion	52.26	47.09
TraesCS7B01G100600.1	Wheat	mitochondrion	51.83	46.35
TraesCS7A01G194900.1	Wheat	mitochondrion	50.97	45.93
GSMUA_Achr7P19940_001	Banana	plastid	51.4	45.18
Os06t0238000-00	Rice	plasma membrane	50.11	44.98
HORVU7Hr1G039760.2	Barley	mitochondrion	50.32	44.66
KXG19688	Sorghum	plastid	49.89	43.12
HORVU6Hr1G043090.2	Barley	cytosol	31.61	40.38
Zm00001d005699_P001	Maize	mitochondrion	45.16	39.4
HORVU4Hr1G008170.1	Barley	cytosol	15.27	38.59
Os09t0386200-01	Rice	plasma membrane	44.95	38.21
TraesCS5A01G201400.1	Wheat	mitochondrion	45.38	38.02
TraesCS5D01G207500.1	Wheat	mitochondrion	45.38	37.54
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	44.73	37.48
TraesCS5B01G200100.1	Wheat	mitochondrion	44.95	37.19
Os06t0238200-00	Rice	plasma membrane	39.14	37.07
Zm00001d020358_P001	Maize	mitochondrion	44.3	36.72
Bra018108.1-P	Field mustard	cytosol	25.59	36.5
OQU89450	Sorghum	mitochondrion	45.59	36.12
CDY24151	Canola	cytosol	36.34	35.73
CDY69575	Canola	cytosol	37.42	35.66
TraesCS7A01G225500.1	Wheat	mitochondrion	40.65	35.0
Solyc02g087200.1.1	Tomato	mitochondrion	36.13	34.93
PGSC0003DMT400001437	Potato	mitochondrion	36.34	34.77
TraesCS7D01G229000.1	Wheat	mitochondrion	39.78	34.39
TraesCS7B01G194100.1	Wheat	mitochondrion	40.0	34.38
CDY30728	Canola	cytosol	37.42	34.12
HORVU7Hr1G046920.1	Barley	mitochondrion	39.14	33.7
HORVU6Hr1G091220.1	Barley	plastid	13.98	33.68
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	39.35	33.64
CDY44594	Canola	cytosol, plastid	39.35	33.33
KRH54443	Soybean	cytosol, mitochondrion	36.77	33.01
KRH63473	Soybean	cytosol, plastid	37.2	32.95
AT5G62560.1	Thale cress	cytosol	39.35	32.74
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	36.77	32.7
Bra025605.1-P	Field mustard	cytosol, plastid	39.35	32.56
GSMUA_Achr9P28140_001	Banana	cytosol	32.69	32.2
CDY53109	Canola	cytosol, plastid	38.28	32.13
CDY36926	Canola	cytosol	35.48	32.1
AT5G40140.1	Thale cress	plastid	37.85	32.0
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.83	31.79
CDY16770	Canola	cytosol, mitochondrion	38.06	31.72
Bra029250.1-P	Field mustard	cytosol	37.63	31.7
Bra031875.1-P	Field mustard	mitochondrion	36.99	31.5
Bra035890.1-P	Field mustard	mitochondrion, plastid	37.85	31.48
Os08t0421850-00	Rice	mitochondrion	39.57	31.45
CDY37807	Canola	mitochondrion	36.77	31.2
KRG93403	Soybean	cytosol	38.06	31.16
CDX87251	Canola	mitochondrion	37.63	31.08
AT5G65200.1	Thale cress	cytosol, mitochondrion	36.77	30.76
HORVU4Hr1G082630.1	Barley	plastid	9.25	30.71
AT3G47820.1	Thale cress	cytosol	35.05	30.7
CDY33979	Canola	mitochondrion	36.34	30.56
OQU80448	Sorghum	mitochondrion	37.63	30.54
EER92069	Sorghum	cytosol	37.42	30.26
PGSC0003DMT400062863	Potato	cytosol	33.98	29.53
Solyc03g113870.1.1	Tomato	cytosol	33.12	29.17
Zm00001d032264_P001	Maize	mitochondrion	35.7	28.97
HORVU6Hr1G008010.2	Barley	plastid	11.4	28.19
KRH18582	Soybean	cytosol	36.77	28.17

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr9G14450_001	EnsemblPlants:GSMUA_Achr9P14450_001	EnsemblPlants:GSMUA_Achr9T14450_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0U0A3	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296B332
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative U-box domain-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14450_001]

Coordinates

chr9:-:9395076..9397076

Molecular Weight (calculated)

49294.5 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.052

Length

465 amino acids

Sequence
(BLAST)

001: MGSLKSFWRF SNHHRSPSSA SGNAPMSSIT VSEMPVEFLC PISRSLMADP VIVPPSGHTF ERSCVQACAD LAFSPPGLFL DLSPSSLLLI PNVALKSAIL
101: SWCQRCGVPS PQPIPLDAAC ALIRSIMPPS TNPHRGYDEK YEELRASSAL PDGKGCRSRI NVQNMRETMS PNTPSAFSQA PKEPPPPTSQ SRDRRIDLCT
201: PRLLAALRSM LLCSSAAVQI NATAALVNLS LELENRVRIL RSGAVAPLVD VLKGGHPEAR DHAAGALFSL SLEDENRAAI GVLGAIPPLL DLFSVPSADG
301: VRARRDAGMA LYYLSLAGSN PRLAMMTVCS LAVCNDGRAA LMDGGAVASV VSLMRSPAAA AVEEYCVAAL YGMSRGSLRF RGLARSAGAE PVLMRVAYSG
401: GGGEMRRNMA KKTLRAMRGE DDTDAPPPMG FPVGDDGSVV SEGLKSFRGR PNHHANPSRM NSAGF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.