Factsheet for Os06t0238000-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 6
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044773_P001	Maize	cytosol	67.95	76.36
TraesCS7D01G196500.1	Wheat	mitochondrion	72.78	73.06
KXG19688	Sorghum	plastid	75.29	72.49
TraesCS7B01G100600.1	Wheat	mitochondrion	72.2	71.92
TraesCS7A01G194900.1	Wheat	mitochondrion	71.24	71.51
HORVU7Hr1G039760.2	Barley	mitochondrion	72.01	71.18
GSMUA_Achr3P06000_001	Banana	plastid	51.93	51.83
GSMUA_Achr5P05220_001	Banana	mitochondrion	48.07	51.34
GSMUA_Achr9P14450_001	Banana	plastid	44.98	50.11
GSMUA_Achr10P...	Banana	cytosol	43.82	49.67
Os06t0238200-00	Rice	plasma membrane	45.56	48.07
GSMUA_Achr7P19940_001	Banana	plastid	48.46	47.45
Os09t0386200-01	Rice	plasma membrane	46.14	43.69
Bra018108.1-P	Field mustard	cytosol	25.68	40.8
CDY24151	Canola	cytosol	35.14	38.48
CDY30728	Canola	cytosol	37.64	38.24
CDY69575	Canola	cytosol	35.71	37.91
Solyc02g087200.1.1	Tomato	mitochondrion	34.17	36.8
PGSC0003DMT400001437	Potato	mitochondrion	34.36	36.63
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	38.22	36.4
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	36.1	35.76
KRH63473	Soybean	cytosol, plastid	36.1	35.62
KRH54443	Soybean	cytosol, mitochondrion	35.52	35.52
CDY44594	Canola	cytosol, plastid	37.64	35.52
Os08t0421850-00	Rice	mitochondrion	39.96	35.38
Bra029250.1-P	Field mustard	cytosol	37.45	35.14
CDY53109	Canola	cytosol, plastid	37.45	35.02
Bra025605.1-P	Field mustard	cytosol, plastid	37.64	34.7
CDY36926	Canola	cytosol	34.36	34.63
AT5G62560.1	Thale cress	cytosol	36.29	33.63
CDX87251	Canola	mitochondrion	36.49	33.57
AT3G47820.1	Thale cress	cytosol	34.17	33.33
Bra035890.1-P	Field mustard	mitochondrion, plastid	35.91	33.27
AT5G40140.1	Thale cress	plastid	35.14	33.09
CDY16770	Canola	cytosol, mitochondrion	35.52	32.97
Bra031875.1-P	Field mustard	mitochondrion	33.98	32.23
CDY37807	Canola	mitochondrion	33.98	32.12
KRG93403	Soybean	cytosol	34.56	31.51
AT5G65200.1	Thale cress	cytosol, mitochondrion	33.59	31.3
CDY33979	Canola	mitochondrion	33.2	31.1
Solyc03g113870.1.1	Tomato	cytosol	31.66	31.06
PGSC0003DMT400062863	Potato	cytosol	31.66	30.65
KRH18582	Soybean	cytosol	34.17	29.16

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:4340611	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAD37861.1	ProteinID:BAD37898.1	ProteinID:BAF19168.1	ProteinID:BAS96973.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os06g0238000	EnsemblPlants:Os06t0238000-00	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	UniProt:Q67VC1
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00004263D2	InterPro:Ubox_domain
RefSeq:XP_015641436.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 20, U-box protein 20Armadillo-like helical domain containing protein. (Os06t0238000-00)

Coordinates

chr6:+:7181620..7183510

Molecular Weight (calculated)

54138.9 Da

IEP (calculated)

8.391

GRAVY (calculated)

-0.073

Length

518 amino acids

Sequence
(BLAST)

001: MATAWPRWRP SSPPMPSSSS SSPSSSFTAD PPAEFLCPIS GTLMADPVVV PPGQTFERAC IQACAALAFS PPAVAADLSS LPPSASSPLV LVPNVALRTA
101: ILNWCDRLSL PYPAPLSPDT ARDVVRRLMP SPPPPPPRSQ APPPPPPASS VRTRSYYSDD LVQQQQEARR EGGSTEERIM AMLGAGPAEQ EAAMALLRKM
201: ARENREMRRE LCTPRLLAAL RPMLLSGDAG VQVNAAAALV NLSLEAENKV RIVRSGAVSP LVEVLRSGHP EARDHAAGAV YSLAVEDENR AAIGVLGAIP
301: PLLELFACAG AAHLARREAG MALYHVSLSG MNRSKIARTP GVVRTLLAAA EAARDDRANE ADAAALRRIA VMILANLAGC PDGRTALMDG GAVAAVVRLM
401: SSGSAAPGSA EEEYCISSLY GMSRGSLRFR GLARAAGVEA ALTPVAEGAG GVGRDMARRT LRAMRGEDDE AAVTATGLLG RQWDDGSVVS EGLVSIRRPP
501: PRRSSYGAGA SGSNTTQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.