Factsheet for VIT_14s0066g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087200.1.1	Tomato	mitochondrion	53.49	60.5
PGSC0003DMT400001437	Potato	mitochondrion	53.49	59.88
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	56.8	59.08
CDY44594	Canola	cytosol, plastid	54.04	53.55
Bra025605.1-P	Field mustard	cytosol, plastid	55.15	53.38
CDY53109	Canola	cytosol, plastid	53.68	52.71
AT5G40140.1	Thale cress	plastid	52.21	51.64
KRG93403	Soybean	cytosol	51.29	49.12
KRH18582	Soybean	cytosol	52.02	46.62
GSMUA_Achr5P05220_001	Banana	mitochondrion	35.11	39.38
GSMUA_Achr9P14450_001	Banana	plastid	33.64	39.35
TraesCS7A01G194900.1	Wheat	mitochondrion	36.76	38.76
TraesCS7D01G196500.1	Wheat	mitochondrion	36.58	38.57
GSMUA_Achr3P06000_001	Banana	plastid	36.76	38.54
TraesCS7B01G100600.1	Wheat	mitochondrion	36.76	38.46
Os06t0238000-00	Rice	plasma membrane	36.4	38.22
Zm00001d044773_P001	Maize	cytosol	32.17	37.96
GSMUA_Achr10P...	Banana	cytosol	31.8	37.86
HORVU7Hr1G039760.2	Barley	mitochondrion	36.21	37.6
KXG19688	Sorghum	plastid	36.03	36.43
Os06t0238200-00	Rice	plasma membrane	32.72	36.25
GSMUA_Achr7P19940_001	Banana	plastid	35.11	36.11
HORVU6Hr1G043090.2	Barley	cytosol	23.9	35.71
TraesCS5A01G201400.1	Wheat	mitochondrion	35.29	34.59
Zm00001d020358_P001	Maize	mitochondrion	35.66	34.58
Zm00001d005699_P001	Maize	mitochondrion	33.64	34.33
TraesCS5D01G207500.1	Wheat	mitochondrion	35.11	33.99
HORVU4Hr1G008170.1	Barley	cytosol	11.4	33.7
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	34.38	33.69
TraesCS5B01G200100.1	Wheat	mitochondrion	34.74	33.63
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.66	33.53
TraesCS7D01G229000.1	Wheat	mitochondrion	32.54	32.9
HORVU4Hr1G082630.1	Barley	plastid	8.46	32.86
Os09t0386200-01	Rice	plasma membrane	32.9	32.72
TraesCS7B01G194100.1	Wheat	mitochondrion	32.35	32.53
HORVU7Hr1G046920.1	Barley	mitochondrion	31.8	32.04
OQU89450	Sorghum	mitochondrion	34.19	31.69
TraesCS7A01G225500.1	Wheat	mitochondrion	31.25	31.48
GSMUA_Achr9P28140_001	Banana	cytosol	26.84	30.93
OQU80448	Sorghum	mitochondrion	31.25	29.67
Zm00001d032264_P001	Maize	mitochondrion	30.7	29.14
Os08t0421850-00	Rice	mitochondrion	30.51	28.38
EER92069	Sorghum	cytosol	29.6	28.0
HORVU6Hr1G091220.1	Barley	plastid	9.74	27.46
HORVU6Hr1G008010.2	Barley	plastid	9.38	27.13

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100255877	wikigene:100255877	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB58548	ProteinID:CCB58548.1	ncoils:Coil	UniProt:F6HV30
EMBL:FN596252	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100255877	wikigene:LOC100255877
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002109BB0	InterPro:Ubox_domain
ArrayExpress:VIT_14s0066g01870	EnsemblPlantsGene:VIT_14s0066g01870	EnsemblPlants:VIT_14s0066g01870.t01	RefSeq:XP_002280597	RefSeq:XP_002280597.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HV30]

Coordinates

chr14:-:28164053..28169703

Molecular Weight (calculated)

58983.2 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.112

Length

544 amino acids

Sequence
(BLAST)

001: MGNGKQRWRV FYKSSSSSNA SKRQSKEPPK EFLCPISGSL MADPVIVSSG QTFERACVQV CKALGFNPTL SEGSSPDFST IIPNLAIQST ILSWCDKCSV
101: DRPKPLDFDS AEKVVRTLMA SQKAENKSED SDKELIKAVG ETPPVLKFAH AITDLNRRST HFYSSSQESV TTTGSTPPLP LATRPSCYSS SSSSEIETLN
201: PDSPEEDEGI IAKLKSPQVF EQEEALVSLR KITRTGEETR VSLCSPRLLS MLRSLIISRY SGIQVNAVAV LVNLSLEKIN KVKIVRSGIV PPLIDVLKGG
301: FPEAQDHAAG ALFSLALEDA NKTAIGVLGA LPPLLHTLRS ESERARNDSA LALYHLSLVQ SNRTKLVKLG AVQILMGMVN SGHLWSRALL VLCNLAACPD
401: GRTAMLDAGA VECLVGLLRG NELDSDSIRE SCLAALYALS FGGSRFKGLA KEAGAMETLM RVEKIGSERA REKAKKILEI MREKTEEGLD WEALLDSGLV
501: SRTRIKIQSF LKLVCKKSGG AVVTKELYSV PDNPPILHNI INAV

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.