CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044773_P001	Maize	cytosol	72.68	84.82
Os06t0238000-00	Rice	plasma membrane	72.49	75.29
TraesCS7D01G196500.1	Wheat	mitochondrion	69.14	72.09
TraesCS7A01G194900.1	Wheat	mitochondrion	67.47	70.35
HORVU7Hr1G039760.2	Barley	mitochondrion	68.4	70.23
TraesCS7B01G100600.1	Wheat	mitochondrion	67.84	70.19
GSMUA_Achr5P05220_001	Banana	mitochondrion	47.03	52.16
GSMUA_Achr3P06000_001	Banana	plastid	49.81	51.64
GSMUA_Achr9P14450_001	Banana	plastid	43.12	49.89
GSMUA_Achr10P...	Banana	cytosol	41.45	48.8
GSMUA_Achr7P19940_001	Banana	plastid	45.72	46.5
Bra018108.1-P	Field mustard	cytosol	24.91	41.1
OQU89450	Sorghum	mitochondrion	44.05	40.37
CDY24151	Canola	cytosol	33.09	37.63
CDY69575	Canola	cytosol	34.01	37.5
OQU80448	Sorghum	mitochondrion	39.59	37.17
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	36.43	36.03
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	34.94	35.95
CDY30728	Canola	cytosol	33.83	35.69
Solyc02g087200.1.1	Tomato	mitochondrion	31.6	35.34
PGSC0003DMT400001437	Potato	mitochondrion	31.6	34.98
KRH54443	Soybean	cytosol, mitochondrion	33.64	34.94
KRH63473	Soybean	cytosol, plastid	34.01	34.86
CDY36926	Canola	cytosol	32.71	34.24
CDY44594	Canola	cytosol, plastid	34.57	33.88
Bra029250.1-P	Field mustard	cytosol	34.76	33.88
EER92069	Sorghum	cytosol	36.06	33.74
Bra025605.1-P	Field mustard	cytosol, plastid	34.57	33.1
AT3G47820.1	Thale cress	cytosol	32.53	32.96
AT5G62560.1	Thale cress	cytosol	34.2	32.92
CDY53109	Canola	cytosol, plastid	33.83	32.85
CDX87251	Canola	mitochondrion	34.2	32.68
Bra035890.1-P	Field mustard	mitochondrion, plastid	33.64	32.38
CDY16770	Canola	cytosol, mitochondrion	33.46	32.26
AT5G40140.1	Thale cress	plastid	32.53	31.82
KRG93403	Soybean	cytosol	33.09	31.34
PGSC0003DMT400062863	Potato	cytosol	31.04	31.21
Solyc03g113870.1.1	Tomato	cytosol	30.48	31.06
Bra031875.1-P	Field mustard	mitochondrion	31.04	30.59
CDY37807	Canola	mitochondrion	31.04	30.47
AT5G65200.1	Thale cress	cytosol, mitochondrion	31.04	30.04
CDY33979	Canola	mitochondrion	30.86	30.02
KRH18582	Soybean	cytosol	32.9	29.16

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A194YIB2	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlants:KXG19688	ProteinID:KXG19688	ProteinID:KXG19688.1	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3010G099000	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0007F2BA1F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:8963316..8964932

Molecular Weight (calculated)

56354.3 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.160

Length

538 amino acids

Sequence
(BLAST)

001: MATGTDRPWW APPPPPPPPT PKPPAAVPSA PRFPSPPSPS SSFTADPPAE FLCPISGTLM ADPVVAPPGQ TFERACIQAC AALAFSPPAV AADLSQSHHS
101: SSSSSPLVLV PNVALRTAIL NWCDRLALPH PAPLSPDTAH DIVRRLMPPQ QRSSLAQPQR PQTQVASSVR VRRPSVFDGF AQVQEPSSRQ RGDALEEEIM
201: AALGADGATP AEQASAMALL RQATRENQEV RRQLCTPRLL AALRPMLLSP DADVQVNAAA AVVNLSLEPE NKVRIVRSGA VSPLVDVLRG GHPEARDHAA
301: GAMYSLAVED ENRAAIGVLG AIPPLLDLFA GAGATGHRAR REAGMALYHV SLSGMNRSKI ARAPGAVRTL LSAAEARDRA SETDAAALRR LAVMVLANLA
401: GCPDGRAALM DGGAVAAVVR LMRNGSVAPG SAEQEYCIST LYGMSRGSMR FRGLARAAGV EAALQPVAEG EGGVGRDLAR RTLRAMRGED DDAPVTATGL
501: LGRQWDDGSV VSEGLVSIRR PPHRSNYAGP SGSNTTQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.