Factsheet for Bra031875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37807	Canola	mitochondrion	97.07	96.72
AT5G65200.1	Thale cress	cytosol, mitochondrion	80.4	78.96
Bra018108.1-P	Field mustard	cytosol	35.53	59.51
KRH63473	Soybean	cytosol, plastid	56.23	58.48
KRH54443	Soybean	cytosol, mitochondrion	54.58	57.53
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	53.48	55.83
Bra029250.1-P	Field mustard	cytosol	52.01	51.45
Bra035890.1-P	Field mustard	mitochondrion, plastid	51.65	50.45
Solyc03g113870.1.1	Tomato	cytosol	45.24	46.78
PGSC0003DMT400062863	Potato	cytosol	45.79	46.73
Bra025605.1-P	Field mustard	cytosol, plastid	45.24	43.95
GSMUA_Achr9P14450_001	Banana	plastid	31.5	36.99
GSMUA_Achr10P...	Banana	cytosol	30.59	36.54
GSMUA_Achr3P06000_001	Banana	plastid	34.62	36.42
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.87	35.88
HORVU4Hr1G082630.1	Barley	plastid	9.16	35.71
HORVU4Hr1G008170.1	Barley	cytosol	11.9	35.33
GSMUA_Achr7P19940_001	Banana	plastid	33.7	34.78
TraesCS7A01G194900.1	Wheat	mitochondrion	32.23	34.11
Zm00001d044773_P001	Maize	cytosol	28.75	34.06
Os06t0238000-00	Rice	plasma membrane	32.23	33.98
TraesCS7D01G196500.1	Wheat	mitochondrion	32.05	33.91
HORVU6Hr1G043090.2	Barley	cytosol	22.53	33.79
TraesCS7B01G100600.1	Wheat	mitochondrion	31.87	33.46
HORVU7Hr1G039760.2	Barley	mitochondrion	31.5	32.82
Os06t0238200-00	Rice	plasma membrane	29.49	32.79
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.42	31.89
HORVU6Hr1G091220.1	Barley	plastid	11.17	31.61
TraesCS5A01G201400.1	Wheat	mitochondrion	31.87	31.35
Zm00001d005699_P001	Maize	mitochondrion	30.4	31.14
TraesCS5B01G200100.1	Wheat	mitochondrion	32.05	31.14
Os09t0386200-01	Rice	plasma membrane	31.14	31.08
KXG19688	Sorghum	plastid	30.59	31.04
Zm00001d020358_P001	Maize	mitochondrion	31.87	31.02
TraesCS5D01G207500.1	Wheat	mitochondrion	31.87	30.96
TraesCS7D01G229000.1	Wheat	mitochondrion	30.04	30.48
HORVU6Hr1G008010.2	Barley	plastid	10.44	30.32
TraesCS7B01G194100.1	Wheat	mitochondrion	30.04	30.31
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.52	30.06
HORVU7Hr1G046920.1	Barley	mitochondrion	29.3	29.63
GSMUA_Achr9P28140_001	Banana	cytosol	25.46	29.45
OQU89450	Sorghum	mitochondrion	31.5	29.3
TraesCS7A01G225500.1	Wheat	mitochondrion	28.94	29.26
OQU80448	Sorghum	mitochondrion	28.57	27.23
Os08t0421850-00	Rice	mitochondrion	28.94	27.01
Zm00001d032264_P001	Maize	mitochondrion	27.84	26.53
EER92069	Sorghum	cytosol	27.29	25.91

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra031875	EnsemblPlants:Bra031875.1	EnsemblPlants:Bra031875.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0070696
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4ESU5	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00025468FF	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G65200 (E=7e-128) PUB38, ATPUB38 | PUB38 (PLANT U-BOX 38); ubiquitin-protein ligase

Coordinates

chrA02:-:27359288..27360928

Molecular Weight (calculated)

60409.0 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.383

Length

546 amino acids

Sequence
(BLAST)

001: MGKSGRLRWN PFSHRSSSSR QEQNQQQQQP PVEFICPISK TIMSDPVVVS SGQTFERVCV QVCRDLGFIP KLNDLNENPP DFSTVIPNRN MKSTIDGWCD
101: SVGVERPQPP DYSAVETNLR HQMPPSEVEI RVSEQELLRA VADRAPVIYH HADSDLMGRR KPTGDFNSTS SDESVIVAQS PFTPLPLTTR PACFSPSSSS
201: SEIEFSAAAN SPEEEEIYNK LKSSDVFDQE QGLIMMRKMT RTKDEARVSL CSSRILALLK SMIVSRYSLV QTNSLASLVN LSLEKTNKLT IVRLGFIPLL
301: IDVLKSGSKE AQEHAAGSIF SLSLEDDNKM PIGVLGALQP LLHALRAAES DRTRHDAGLA LYHLSLNQTN RLKLVRLGAV PVLFSLVRSG ESASRALLVI
401: CNLACCSEGR SAMLDANAVG ILVGKLREEE ERRGEESRSS AAARENCVAA LFALSHESLR FKGLAKEARV VEVLKEVEER GTERAREKAK KILQLMRERV
501: PEEEEDDGEG TVDWDRVILD SNGSIRSRFR GGGGRNRMVT QNSSGF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.