Factsheet for Bra029250.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30728	Canola	cytosol	87.68	94.9
Bra018108.1-P	Field mustard	cytosol	47.1	79.75
Bra035890.1-P	Field mustard	mitochondrion, plastid	78.99	78.0
AT5G62560.1	Thale cress	cytosol	78.44	77.46
Bra031875.1-P	Field mustard	mitochondrion	51.45	52.01
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	49.28	52.01
KRH63473	Soybean	cytosol, plastid	48.55	51.05
KRH54443	Soybean	cytosol, mitochondrion	47.28	50.39
Solyc03g113870.1.1	Tomato	cytosol	41.49	43.37
PGSC0003DMT400062863	Potato	cytosol	41.67	42.99
Bra025605.1-P	Field mustard	cytosol, plastid	42.21	41.46
Zm00001d044773_P001	Maize	cytosol	31.7	37.96
TraesCS7B01G100600.1	Wheat	mitochondrion	35.51	37.69
GSMUA_Achr9P14450_001	Banana	plastid	31.7	37.63
Os06t0238000-00	Rice	plasma membrane	35.14	37.45
GSMUA_Achr7P19940_001	Banana	plastid	35.69	37.24
TraesCS7D01G196500.1	Wheat	mitochondrion	34.6	37.02
GSMUA_Achr10P...	Banana	cytosol	30.62	36.98
GSMUA_Achr5P05220_001	Banana	mitochondrion	32.25	36.7
TraesCS7A01G194900.1	Wheat	mitochondrion	34.24	36.63
HORVU7Hr1G039760.2	Barley	mitochondrion	34.6	36.45
GSMUA_Achr3P06000_001	Banana	plastid	33.7	35.84
KXG19688	Sorghum	plastid	33.88	34.76
Os06t0238200-00	Rice	plasma membrane	30.62	34.42
HORVU6Hr1G043090.2	Barley	cytosol	22.64	34.34
TraesCS5A01G201400.1	Wheat	mitochondrion	34.24	34.05
TraesCS5D01G207500.1	Wheat	mitochondrion	34.42	33.81
Zm00001d005699_P001	Maize	mitochondrion	32.61	33.77
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	33.7	33.51
Zm00001d020358_P001	Maize	mitochondrion	34.06	33.51
TraesCS5B01G200100.1	Wheat	mitochondrion	34.06	33.45
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.33	32.95
OQU89450	Sorghum	mitochondrion	34.24	32.2
HORVU4Hr1G008170.1	Barley	cytosol	10.69	32.07
Os09t0386200-01	Rice	plasma membrane	31.7	31.99
TraesCS7B01G194100.1	Wheat	mitochondrion	31.34	31.98
TraesCS7D01G229000.1	Wheat	mitochondrion	31.16	31.97
TraesCS7A01G225500.1	Wheat	mitochondrion	31.16	31.85
HORVU7Hr1G046920.1	Barley	mitochondrion	31.16	31.85
Os08t0421850-00	Rice	mitochondrion	32.25	30.43
Zm00001d032264_P001	Maize	mitochondrion	31.52	30.37
OQU80448	Sorghum	mitochondrion	31.16	30.02
HORVU4Hr1G082630.1	Barley	plastid	7.61	30.0
GSMUA_Achr9P28140_001	Banana	cytosol	24.64	28.81
HORVU6Hr1G091220.1	Barley	plastid	9.6	27.46
EER92069	Sorghum	cytosol	28.44	27.3
HORVU6Hr1G008010.2	Barley	plastid	8.15	23.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra029250	EnsemblPlants:Bra029250.1	EnsemblPlants:Bra029250.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4EKD3	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002545DA4	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT5G62560 (E=4e-255) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA02:+:26310379..26312037

Molecular Weight (calculated)

59923.2 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.287

Length

552 amino acids

Sequence
(BLAST)

001: MGGNNRQRWF SFHQRSASAT ATTVPQHKHD ETPPEFLCPI TGFLMSDPVV VPSGQTFERL SVQICRNLGF VPDLLDGTRP DFSAVIPNLA MKSTIFSWCD
101: RKKIDHPRPP DAAYVENVVR ARMDKDPDPD PNPGQESLER EILPPVAENS PSDYDAVMEL IRARSKKPAS PTASSVESVT IRQTPFFPTR AVTMFSSSST
201: TSSSSGTHAG FDSSSPISDY SSPPSPPMSP DEEEIYNKLR GADIFDHEQG LILLRKMTRS SEELRVSLCT DRILSFLRQL LVSRYNLVQT NAAASLVNLS
301: LEKQNKVKIV RSGFVPLLID VLKSGTTEAQ EHVAGALFSL ALEDENKMVI GVLGAVEPLL HALRASESER ARQDAALALY HLSLIPSNRT RLVRAGAVAT
401: LLTMARSGES TSRMLLVLCN LAACPDGKGA MLDGNAVAIL VGKLREGGED EAARENCVAV LLTLCQGNLR FRGLASEAGA EEVLKEVEES GNGRVKEKAG
501: KILQAMRGGG GESEYGENAE AREWNRMIEA TGLSRTQFQG GQNGGFACSS QF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.