Factsheet for GSMUA_Achr10P31210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P19940_001	Banana	plastid	66.08	57.09
GSMUA_Achr9P14450_001	Banana	plastid	49.23	48.39
GSMUA_Achr5P05220_001	Banana	mitochondrion	50.11	47.22
Zm00001d044773_P001	Maize	cytosol	47.26	46.85
GSMUA_Achr3P06000_001	Banana	plastid	52.08	45.86
Os06t0238000-00	Rice	plasma membrane	49.67	43.82
TraesCS7D01G196500.1	Wheat	mitochondrion	49.02	43.41
HORVU6Hr1G043090.2	Barley	cytosol	34.57	43.41
TraesCS7B01G100600.1	Wheat	mitochondrion	49.02	43.08
TraesCS7A01G194900.1	Wheat	mitochondrion	47.92	42.44
HORVU7Hr1G039760.2	Barley	mitochondrion	48.14	41.98
KXG19688	Sorghum	plastid	48.8	41.45
Bra018108.1-P	Field mustard	cytosol	29.1	40.8
Zm00001d005699_P001	Maize	mitochondrion	47.48	40.71
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	47.92	39.46
HORVU4Hr1G008170.1	Barley	cytosol	15.75	39.13
TraesCS5B01G200100.1	Wheat	mitochondrion	47.7	38.79
TraesCS5A01G201400.1	Wheat	mitochondrion	47.05	38.74
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	14.66	38.73
Zm00001d020358_P001	Maize	mitochondrion	47.05	38.32
TraesCS5D01G207500.1	Wheat	mitochondrion	46.83	38.08
Os09t0386200-01	Rice	plasma membrane	45.3	37.84
Os06t0238200-00	Rice	plasma membrane	40.48	37.68
OQU89450	Sorghum	mitochondrion	48.14	37.48
HORVU6Hr1G091220.1	Barley	plastid	15.75	37.31
HORVU4Hr1G082630.1	Barley	plastid	11.38	37.14
TraesCS7D01G229000.1	Wheat	mitochondrion	42.67	36.25
TraesCS7B01G194100.1	Wheat	mitochondrion	42.23	35.67
TraesCS7A01G225500.1	Wheat	mitochondrion	41.79	35.37
CDY69575	Canola	cytosol	37.64	35.25
HORVU7Hr1G046920.1	Barley	mitochondrion	41.36	35.0
CDY24151	Canola	cytosol	36.1	34.88
GSMUA_Achr9P28140_001	Banana	cytosol	35.45	34.32
KRH54443	Soybean	cytosol, mitochondrion	38.07	33.59
Solyc02g087200.1.1	Tomato	mitochondrion	34.79	33.06
EER92069	Sorghum	cytosol	41.58	33.04
KRH63473	Soybean	cytosol, plastid	37.86	32.95
CDY30728	Canola	cytosol	36.76	32.94
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	37.42	32.7
PGSC0003DMT400001437	Potato	mitochondrion	34.57	32.51
CDY36926	Canola	cytosol	36.54	32.49
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	37.86	31.8
OQU80448	Sorghum	mitochondrion	39.82	31.76
Os08t0421850-00	Rice	mitochondrion	40.04	31.28
Zm00001d032264_P001	Maize	mitochondrion	39.17	31.24
AT5G62560.1	Thale cress	cytosol	38.07	31.13
AT3G47820.1	Thale cress	cytosol	36.1	31.07
CDY37807	Canola	mitochondrion	36.76	30.66
Bra029250.1-P	Field mustard	cytosol	36.98	30.62
Bra031875.1-P	Field mustard	mitochondrion	36.54	30.59
CDY44594	Canola	cytosol, plastid	36.54	30.42
Bra035890.1-P	Field mustard	mitochondrion, plastid	37.2	30.41
CDY33979	Canola	mitochondrion	36.76	30.38
CDY16770	Canola	cytosol, mitochondrion	36.98	30.29
CDX87251	Canola	mitochondrion	36.98	30.02
KRG93403	Soybean	cytosol	37.2	29.93
PGSC0003DMT400062863	Potato	cytosol	34.79	29.72
Bra025605.1-P	Field mustard	cytosol, plastid	36.54	29.72
CDY53109	Canola	cytosol, plastid	35.89	29.6
AT5G40140.1	Thale cress	plastid	35.45	29.45
Solyc03g113870.1.1	Tomato	cytosol	33.7	29.17
AT5G65200.1	Thale cress	cytosol, mitochondrion	35.23	28.96
HORVU6Hr1G008010.2	Barley	plastid	11.38	27.66
KRH18582	Soybean	cytosol	35.89	27.02

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr10G31210_001	EnsemblPlants:GSMUA_Achr10P31210_001	EnsemblPlants:GSMUA_Achr10T31210_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0RMZ5	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294EF2C	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative U-box domain-containing protein 38 [Source:GMGC_GENE;Acc:GSMUA_Achr10G31210_001]

Coordinates

chr10:+:33400053..33402797

Molecular Weight (calculated)

47877.0 Da

IEP (calculated)

8.222

GRAVY (calculated)

0.070

Length

457 amino acids

Sequence
(BLAST)

001: MADPVIVPSG HTFERSCIQG CLDLAFPPPG LPLDLQLPFS SPAAAPQLLL IPNAALKSAI FAWCARCGLP PPHPVPTEAA LALVRCLMPR DRSTPPSAID
101: VRASEFFEGG KSQKDDVLAS ESEVTLIIPP SPFEREREKN KCSSSSTQES AAAALRKATR ESRDRRVALC TPRLLGALRP VLLSPCAAVQ INAAAAIVNL
201: SLEPVNKVRI LRSGMVPALV EVLRRGHPEA RDHAAGALFG LALEEENRAA IGVLGAISPL LNMFAGPSAD GPRARRDAGL ALYHLSLADA AAPGEQGQGL
301: GPATIAVMVI HNLAGCNEGR AALMGAGAVT ALVRLIKGPP LTAAEEECVA ALYWMSQGSL RFRCLAKAAG AEQVLMKVAT EGGGGGPLRE MARRAVRAMR
401: REEDDEVAVV AHGFGAEADG SSAVSDGLIS FRWRRNGFGG RPGGIKSANI ITSNLLH

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.