CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16770	Canola	cytosol, mitochondrion	88.81	89.61
CDY30728	Canola	cytosol	74.42	82.16
CDY69575	Canola	cytosol	70.34	81.15
AT5G62560.1	Thale cress	cytosol	77.62	78.18
CDY24151	Canola	cytosol	61.46	73.15
CDY36926	Canola	cytosol	63.06	69.07
CDY37807	Canola	mitochondrion	50.44	51.82
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	47.96	51.63
KRH63473	Soybean	cytosol, plastid	48.13	51.62
CDY33979	Canola	mitochondrion	50.09	50.99
KRH54443	Soybean	cytosol, mitochondrion	46.36	50.39
Solyc03g113870.1.1	Tomato	cytosol	41.56	44.32
PGSC0003DMT400062863	Potato	cytosol	41.39	43.55
CDY44594	Canola	cytosol, plastid	40.67	41.71
CDY53109	Canola	cytosol, plastid	40.5	41.16
GSMUA_Achr9P14450_001	Banana	plastid	31.08	37.63
Zm00001d044773_P001	Maize	cytosol	30.37	37.09
GSMUA_Achr10P...	Banana	cytosol	30.02	36.98
Os06t0238000-00	Rice	plasma membrane	33.57	36.49
TraesCS7B01G100600.1	Wheat	mitochondrion	33.39	36.15
TraesCS7D01G196500.1	Wheat	mitochondrion	33.04	36.05
GSMUA_Achr5P05220_001	Banana	mitochondrion	30.91	35.88
GSMUA_Achr7P19940_001	Banana	plastid	33.57	35.73
HORVU7Hr1G039760.2	Barley	mitochondrion	33.21	35.69
TraesCS7A01G194900.1	Wheat	mitochondrion	32.68	35.66
GSMUA_Achr3P06000_001	Banana	plastid	32.5	35.26
KXG19688	Sorghum	plastid	32.68	34.2
HORVU6Hr1G043090.2	Barley	cytosol	21.85	33.79
TraesCS5A01G201400.1	Wheat	mitochondrion	33.21	33.69
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	33.04	33.51
TraesCS5B01G200100.1	Wheat	mitochondrion	33.21	33.27
TraesCS5D01G207500.1	Wheat	mitochondrion	33.04	33.1
Zm00001d005699_P001	Maize	mitochondrion	31.08	32.83
Os06t0238200-00	Rice	plasma membrane	28.6	32.79
HORVU4Hr1G008170.1	Barley	cytosol	10.66	32.61
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.95	32.37
Os09t0386200-01	Rice	plasma membrane	31.26	32.18
Zm00001d020358_P001	Maize	mitochondrion	31.79	31.91
TraesCS7D01G229000.1	Wheat	mitochondrion	29.84	31.23
TraesCS7B01G194100.1	Wheat	mitochondrion	29.84	31.05
OQU89450	Sorghum	mitochondrion	32.33	31.01
TraesCS7A01G225500.1	Wheat	mitochondrion	29.66	30.93
HORVU7Hr1G046920.1	Barley	mitochondrion	29.48	30.74
Os08t0421850-00	Rice	mitochondrion	31.44	30.26
OQU80448	Sorghum	mitochondrion	29.66	29.14
Zm00001d032264_P001	Maize	mitochondrion	29.48	28.97
HORVU4Hr1G082630.1	Barley	plastid	7.1	28.57
GSMUA_Achr9P28140_001	Banana	cytosol	23.45	27.97
EER92069	Sorghum	cytosol	27.0	26.43
HORVU6Hr1G091220.1	Barley	plastid	8.7	25.39
HORVU6Hr1G008010.2	Barley	plastid	7.82	23.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078DDA1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX87251	ProteinID:CDX87251	ProteinID:CDX87251.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00146192001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE6986	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC09g05660D

Coordinates

chrLK031849:+:1458801..1460568

Molecular Weight (calculated)

60620.1 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.209

Length

563 amino acids

Sequence
(BLAST)

001: MGGTKKRWFS FHQRSASATT TTVPQHKHDE TPPEFICPIT GFLMSDPVVV PSGQTFERLS VQVCRNLGYV PNLLDGTRPD FSTVIPNLAM KSTIFSWCDR
101: NKVDHPRPPD SAYVENVVRA RMNKDPRSRI GTQPTSKISG SPEPEILPPV AENSPSDYDA VMEAIRARSK NSVLSPSPSP TTSLESVTVG QSPYHPTRAV
201: SMFSSSFTTS SGVYVGAESP NAISFSSSDY SSSSPMSSEE EEIFNKLRTA DIFDHEQGLI LLRKMTRTSE ELRVSLCTDR ILSFLRSLLV SRYNLVQTNA
301: AASLVNLSLE KQNKVKIVRS GFVPLLIDVL KSGTTEAQEH VAGALFSLAL EDENKMVIGV LGAVEPLLHA LRSSESERAR QDAALALYHL SLVPSNRTRL
401: VRAGAVATLL SLVMSGESTS RILLVLCNLA ACPDGKGAML EGNAVAILVG KLREGGGDDS EAARENCVAV LLTLCQGNLR FRGLASEVGT EEVLKGVEES
501: GNGRAKENAA KILQVMRGGS GGGSAFGENG EAREWNRMLE GTGLSRTQFQ GGQNGGFACS SQF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.