Factsheet for VIT_17s0000g07730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63473	Soybean	cytosol, plastid	64.44	64.19
KRH54443	Soybean	cytosol, mitochondrion	62.91	63.51
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	59.08	56.8
CDY24151	Canola	cytosol	50.67	56.03
Bra018108.1-P	Field mustard	cytosol	34.23	54.91
CDY69575	Canola	cytosol	49.9	53.48
Bra031875.1-P	Field mustard	mitochondrion	55.83	53.48
CDY33979	Canola	mitochondrion	56.41	53.35
AT5G65200.1	Thale cress	cytosol, mitochondrion	56.6	53.24
CDY37807	Canola	mitochondrion	55.64	53.1
Solyc03g113870.1.1	Tomato	cytosol	52.58	52.08
PGSC0003DMT400062863	Potato	cytosol	53.15	51.96
CDY30728	Canola	cytosol	50.48	51.76
CDY36926	Canola	cytosol	48.95	49.81
Bra029250.1-P	Field mustard	cytosol	52.01	49.28
AT5G62560.1	Thale cress	cytosol	52.2	48.84
AT3G47820.1	Thale cress	cytosol	49.33	48.59
CDY16770	Canola	cytosol, mitochondrion	51.24	48.03
CDX87251	Canola	mitochondrion	51.63	47.96
Bra035890.1-P	Field mustard	mitochondrion, plastid	50.67	47.41
Zm00001d044773_P001	Maize	cytosol	33.27	37.74
GSMUA_Achr10P...	Banana	cytosol	32.7	37.42
GSMUA_Achr5P05220_001	Banana	mitochondrion	34.42	37.11
GSMUA_Achr9P14450_001	Banana	plastid	32.7	36.77
GSMUA_Achr3P06000_001	Banana	plastid	36.33	36.61
Os06t0238000-00	Rice	plasma membrane	35.76	36.1
TraesCS7D01G196500.1	Wheat	mitochondrion	35.37	35.85
TraesCS7A01G194900.1	Wheat	mitochondrion	35.18	35.66
TraesCS7B01G100600.1	Wheat	mitochondrion	35.37	35.58
Os06t0238200-00	Rice	plasma membrane	33.08	35.23
GSMUA_Achr7P19940_001	Banana	plastid	35.56	35.16
KXG19688	Sorghum	plastid	35.95	34.94
HORVU7Hr1G039760.2	Barley	mitochondrion	34.8	34.73
Zm00001d005699_P001	Maize	mitochondrion	34.23	33.58
HORVU6Hr1G043090.2	Barley	cytosol	23.33	33.52
TraesCS5A01G201400.1	Wheat	mitochondrion	35.18	33.15
HORVU4Hr1G008170.1	Barley	cytosol	11.66	33.15
TraesCS5D01G207500.1	Wheat	mitochondrion	35.18	32.74
Zm00001d020358_P001	Maize	mitochondrion	34.99	32.62
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	34.61	32.61
TraesCS5B01G200100.1	Wheat	mitochondrion	34.8	32.38
Os09t0386200-01	Rice	plasma membrane	33.84	32.36
TraesCS7D01G229000.1	Wheat	mitochondrion	33.27	32.34
TraesCS7B01G194100.1	Wheat	mitochondrion	33.27	32.16
HORVU7Hr1G046920.1	Barley	mitochondrion	32.7	31.67
HORVU4Hr1G082630.1	Barley	plastid	8.41	31.43
TraesCS7A01G225500.1	Wheat	mitochondrion	32.31	31.3
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.32	31.21
HORVU6Hr1G091220.1	Barley	plastid	11.28	30.57
OQU89450	Sorghum	mitochondrion	34.03	30.32
GSMUA_Achr9P28140_001	Banana	cytosol	27.34	30.3
OQU80448	Sorghum	mitochondrion	31.55	28.8
Zm00001d032264_P001	Maize	mitochondrion	31.36	28.62
Os08t0421850-00	Rice	mitochondrion	30.59	27.35
HORVU6Hr1G008010.2	Barley	plastid	9.56	26.6
EER92069	Sorghum	cytosol	29.06	26.43

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100244998	wikigene:100244998	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB43009	ProteinID:CCB43009.1	UniProt:F6GSV2	EMBL:FN594950
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100244998	wikigene:LOC100244998	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001985118	InterPro:Ubox_domain	ArrayExpress:VIT_17s0000g07730
EnsemblPlantsGene:VIT_17s0000g07730	EnsemblPlants:VIT_17s0000g07730.t01	unigene:Vvi.22570	RefSeq:XP_002283638	RefSeq:XP_002283638.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GSV2]

Coordinates

chr17:+:8702312..8704391

Molecular Weight (calculated)

56600.9 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.165

Length

523 amino acids

Sequence
(BLAST)

001: MGGNGKHRWK ISFRSSSSMP KQSPKEFMCP ISGSLMADPV VVASGQTFER ISVQVCRNLA FVPVLGDGSR PDFTVVIPNL AMKSAILNWC AASRVDRPTE
101: PEYGSVETLV RAAMGSDGDD RFETSEKELL RAVPGNPPVM FSHAATEVNH RPNHFYSSSS EESVIAAVPA TPLPLTTRPS CYSSFSSSSD EALSLAVTLD
201: PISSEEEEIL GKLKSSEVHE QEEGLILLRT ITRTKEDLRV SLCTPGVLSA LRLLLNSRYG VVQTNAVASV VNLSLEKPNK AKIVRSGIVP PLIDLLKGGL
301: PESQEHAAGA LFSLAIEDNN KTAIGVMGAL PPLLHSLRSE SERTRHDSAL ALYHLSLDQS NRVKLVKLGA IPTLLAMVKS GDLASRALLI LCNMAASGDG
401: RSAMLDANAV DCLVGLLRGK ELDSESTQEN CVAVLYLLSH GSMRFKGLAR EARAVEVLRE VEERGSGRAR EKAKRMLQMM RGRDEEEEVD WEGVLESGAL
501: SQPRYRVGGA GKQHIHGAYS TEF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.