CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36926	Canola	cytosol	87.53	80.54
AT3G47820.1	Thale cress	cytosol	85.2	75.89
CDY69575	Canola	cytosol	74.42	72.13
CDY30728	Canola	cytosol	74.63	69.22
CDX87251	Canola	mitochondrion	73.15	61.46
CDY16770	Canola	cytosol, mitochondrion	72.3	61.29
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	56.03	50.67
CDY37807	Canola	mitochondrion	58.14	50.18
CDY33979	Canola	mitochondrion	57.72	49.37
KRH63473	Soybean	cytosol, plastid	54.33	48.95
KRH54443	Soybean	cytosol, mitochondrion	53.28	48.65
CDY44594	Canola	cytosol, plastid	49.89	42.99
CDY53109	Canola	cytosol, plastid	49.26	42.06
Solyc03g113870.1.1	Tomato	cytosol	45.24	40.53
PGSC0003DMT400062863	Potato	cytosol	45.45	40.19
GSMUA_Achr9P14450_001	Banana	plastid	35.73	36.34
TraesCS7D01G196500.1	Wheat	mitochondrion	39.53	36.24
GSMUA_Achr10P...	Banana	cytosol	34.88	36.1
Zm00001d044773_P001	Maize	cytosol	35.1	36.01
TraesCS7B01G100600.1	Wheat	mitochondrion	39.32	35.77
TraesCS7A01G194900.1	Wheat	mitochondrion	38.69	35.47
GSMUA_Achr5P05220_001	Banana	mitochondrion	36.36	35.46
Os06t0238000-00	Rice	plasma membrane	38.48	35.14
HORVU7Hr1G039760.2	Barley	mitochondrion	38.48	34.73
GSMUA_Achr3P06000_001	Banana	plastid	38.05	34.68
GSMUA_Achr7P19940_001	Banana	plastid	37.84	33.84
HORVU6Hr1G043090.2	Barley	cytosol	25.58	33.24
KXG19688	Sorghum	plastid	37.63	33.09
Os06t0238200-00	Rice	plasma membrane	33.83	32.59
Zm00001d005699_P001	Maize	mitochondrion	36.58	32.46
Zm00001d020358_P001	Maize	mitochondrion	38.05	32.09
TraesCS5A01G201400.1	Wheat	mitochondrion	37.63	32.07
HORVU4Hr1G008170.1	Barley	cytosol	12.47	32.07
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	11.63	31.79
TraesCS5D01G207500.1	Wheat	mitochondrion	37.63	31.67
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	36.79	31.35
TraesCS7D01G229000.1	Wheat	mitochondrion	35.52	31.23
TraesCS5B01G200100.1	Wheat	mitochondrion	36.79	30.96
TraesCS7B01G194100.1	Wheat	mitochondrion	35.31	30.87
HORVU7Hr1G046920.1	Barley	mitochondrion	35.1	30.74
TraesCS7A01G225500.1	Wheat	mitochondrion	34.46	30.19
Os09t0386200-01	Rice	plasma membrane	34.88	30.16
OQU89450	Sorghum	mitochondrion	37.21	29.98
Os08t0421850-00	Rice	mitochondrion	36.36	29.4
OQU80448	Sorghum	mitochondrion	35.52	29.32
Zm00001d032264_P001	Maize	mitochondrion	35.1	28.97
HORVU4Hr1G082630.1	Barley	plastid	8.46	28.57
GSMUA_Achr9P28140_001	Banana	cytosol	27.48	27.54
HORVU6Hr1G091220.1	Barley	plastid	10.78	26.42
EER92069	Sorghum	cytosol	31.29	25.74
HORVU6Hr1G008010.2	Barley	plastid	9.09	22.87

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078GFK5	UniProt:A0A078GFK5	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY24151	ProteinID:CDY24151	ProteinID:CDY24151.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00024746001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EEBAE2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC03g57260DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GFK5]

Coordinates

chrLK032154:-:268134..269744

Molecular Weight (calculated)

51476.6 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.214

Length

473 amino acids

Sequence
(BLAST)

001: MGENGRHRWF SFNHHRSASA TSMPQNNPGE TPAEFLCPIT GFLMSDPVVV ASGQTFERIS VQVCRNLGFA PKLHDGSQPD LSTVIPNLAM KSTILSWCNR
101: KKVEHPRPPD YAYVEGVVRA RMDKEPVTYS SSSESSFSTS DYSSFPPMSE EEEEIYNKLR SANTVDHEQG LILLRKTTRS SESSRISLCT ERLLSLLRSL
201: IVSRYNIVQT NAAASLVNLS LEKPNKLKIV RSGFVPLLID VLKSGSTEAQ EHVIGALFSL AVEEENKMVI GVLGAVEPLL HALRSSESER ARQDAALALY
301: HLSLIPNNRT RLVRAGAVPM MLSMVRSGES ASRILLLLCN LAACSEGKGA MLDGNGVAIL VGKLREGGAD SEAARENCVG ALLTLSVGNM RFRGLASEAG
401: AVEILTEIVE SEGGSERLKE KAGKILQAMR GGEREFGEGA EAREWNRMLE ASGLSRSQLQ GGQKEGFAYS SQF

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.