CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93403	Soybean	cytosol	81.05	86.62
Solyc02g087200.1.1	Tomato	mitochondrion	45.3	57.17
PGSC0003DMT400001437	Potato	mitochondrion	45.47	56.79
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	46.62	52.02
KRH54443	Soybean	cytosol, mitochondrion	43.16	50.58
KRH63473	Soybean	cytosol, plastid	43.33	50.1
CDY44594	Canola	cytosol, plastid	44.65	49.36
AT5G40140.1	Thale cress	plastid	44.65	49.27
Bra025605.1-P	Field mustard	cytosol, plastid	44.48	48.04
CDY53109	Canola	cytosol, plastid	43.82	48.01
GSMUA_Achr9P14450_001	Banana	plastid	28.17	36.77
GSMUA_Achr10P...	Banana	cytosol	27.02	35.89
GSMUA_Achr3P06000_001	Banana	plastid	30.64	35.84
Zm00001d044773_P001	Maize	cytosol	26.69	35.14
TraesCS7D01G196500.1	Wheat	mitochondrion	29.65	34.88
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.88	34.68
GSMUA_Achr5P05220_001	Banana	mitochondrion	27.51	34.43
TraesCS7B01G100600.1	Wheat	mitochondrion	29.32	34.23
Os06t0238000-00	Rice	plasma membrane	29.16	34.17
TraesCS7A01G194900.1	Wheat	mitochondrion	29.0	34.11
GSMUA_Achr7P19940_001	Banana	plastid	29.49	33.84
HORVU6Hr1G043090.2	Barley	cytosol	20.1	33.52
HORVU7Hr1G039760.2	Barley	mitochondrion	28.5	33.02
KXG19688	Sorghum	plastid	29.16	32.9
Zm00001d020358_P001	Maize	mitochondrion	29.32	31.73
Zm00001d005699_P001	Maize	mitochondrion	27.68	31.52
TraesCS5A01G201400.1	Wheat	mitochondrion	28.67	31.35
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	28.34	30.99
HORVU4Hr1G008170.1	Barley	cytosol	9.39	30.98
TraesCS5D01G207500.1	Wheat	mitochondrion	28.67	30.96
Os06t0238200-00	Rice	plasma membrane	24.88	30.75
TraesCS5B01G200100.1	Wheat	mitochondrion	28.34	30.61
GSMUA_Achr9P28140_001	Banana	cytosol	23.39	30.08
HORVU4Hr1G082630.1	Barley	plastid	6.92	30.0
Os09t0386200-01	Rice	plasma membrane	26.69	29.62
OQU89450	Sorghum	mitochondrion	28.01	28.96
TraesCS7B01G194100.1	Wheat	mitochondrion	25.04	28.1
TraesCS7D01G229000.1	Wheat	mitochondrion	24.71	27.88
HORVU7Hr1G046920.1	Barley	mitochondrion	24.71	27.78
TraesCS7A01G225500.1	Wheat	mitochondrion	24.05	27.04
Os08t0421850-00	Rice	mitochondrion	25.7	26.67
OQU80448	Sorghum	mitochondrion	25.04	26.53
Zm00001d032264_P001	Maize	mitochondrion	25.04	26.53
HORVU6Hr1G091220.1	Barley	plastid	8.4	26.42
EER92069	Sorghum	cytosol	24.55	25.91
HORVU6Hr1G008010.2	Barley	plastid	7.25	23.4

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100775869	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02008096	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_13G069300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:K7LXC7	EnsemblPlants:KRH18582	ProteinID:KRH18582	ProteinID:KRH18582.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023D180A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:16917478..16919883

Molecular Weight (calculated)

66621.1 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.336

Length

607 amino acids

Sequence
(BLAST)

001: MEIQQSLKLT IHKKWPSSPK KPPKESEPIT PTPNTPKLKW KKIFFQTKTK TQIQTPPEEF LCPISRSLMF DPVIVSSGHS YERSSVEACK NVNFTPQLPD
101: GTTPDFSTLI PNLALKSAIL KWCQSTHTPP PHPNNNPVQT LISSNPNLVH TINPSNTNLV HTNPNPSPEK ISDQDLILNS LSENPPHPDN NNHLVQTLIS
201: SNANLVHPEK ISDKDLILNS LNENPPVKNL CHHAETEVPI RPTHLYTSSE ESIATTSAST PPLQFSTRPS CCYYSSPSSS ELEPATIPEE EEIMTKLKNP
301: QLNAIEEALI SLRKLTRIRE ETRLQLCTPR LLSALRSLVL SKHVNVQVNA LASVVNLSLE KSNKVKIVRS GMVPPLIEVL KFGSSEAQEH GAGALFSLAL
401: DDDNKTAIGV LGGLAPLLHM LRSESERTRH DSALALYHLS LVQSNRSKMV KLGSVPVLLN MVKSGHMTGR VLLILGNLGS GSDGRATMLD AGMVECLVGL
501: LSGAESRSGS TRESCVSVMY ALSHGGLRFK AVAKVAGVME VMQKVEKVGT ERARNKVRKI LEIMRAKEVE EEDHVDWEEL LDSGLPCRTR TRLGAGLDDS
601: TPNSAQF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.