Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra039199.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | Bra039199.1-P | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85477 | Canola | cytosol | 98.62 | 99.72 |
| AT5G17020.1 | Thale cress | cytosol | 93.57 | 94.7 |
| Bra006382.1-P | Field mustard | cytosol | 93.84 | 94.36 |
| Bra008580.1-P | Field mustard | cytosol | 94.76 | 91.64 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 86.76 | 87.73 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 85.11 | 86.14 |
| KRH24046 | Soybean | cytosol, nucleus | 84.65 | 85.52 |
| KRH29017 | Soybean | cytosol, nucleus | 84.38 | 85.24 |
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 4.23 | 85.19 |
| KRH27740 | Soybean | cytosol | 83.18 | 84.5 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 83.36 | 84.37 |
| KRH77701 | Soybean | cytosol | 82.54 | 83.85 |
| Bra021372.1-P | Field mustard | cytosol | 81.89 | 82.65 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 81.25 | 82.62 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 80.51 | 82.49 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 80.97 | 82.41 |
| EER90476 | Sorghum | cytosol | 80.97 | 82.26 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 83.27 | 81.84 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 78.49 | 81.49 |
| EER98405 | Sorghum | cytosol | 78.22 | 79.76 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 80.42 | 79.69 |
| Zm00001d034914_P037 | Maize | cytosol | 79.96 | 77.54 |
| Zm00001d012815_P022 | Maize | cytosol | 77.48 | 73.24 |
| Bra032016.1-P | Field mustard | cytosol | 67.83 | 71.17 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 11.95 | 66.33 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 2.21 | 54.55 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra023593 | EnsemblPlants:Bra023593.1 |
| EnsemblPlants:Bra023593.1-P | InterPro:CRM1_C_dom | InterPro:Exportin-1/Importin-b-like | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0008536 | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | UniProt:M4E490 |
| PFAM:PF03810 | PFAM:PF08389 | PFAM:PF08767 | PFscan:PS50166 | PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 |
| SMART:SM00913 | SMART:SM01102 | SUPFAM:SSF48371 | UniParc:UPI00025430B5 | SEG:seg | : |
Description
AT5G17020 (E=0.0) XPO1A, ATCRM1, ATXPO1, XPO1 | XPO1A; protein binding / protein transporter/ receptor
Coordinates
chrA02:+:4111895..4119331
Molecular Weight (calculated)
124742.0 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.072
Length
1088 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TKSMDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVTLSGNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHVKLSENLI
0201: FSFEFKLIHE LCLYVLSASQ RQDLIRSTLS ALHAYLSWIP LGYIFESPLL ETLLRFFPVP AYRNLTLQCL TEVAALNFGD FYNIQYVKMY TVFIGQLQTI
0301: LPPSTNIPEA YSNGSDEEQA FIQNLALFFT SFFKFHIRVL ESAPDIVALL LTGLEYLINI SYVDDTEVFK VCLDYWNSLV LELFDAHHNS DNPAANANLM
0401: GLQMSFIPGM VDGLGSQVMQ RRQLYSNPMS KLRGLMISRM AKPEEVLIVE DENGNIVRET MKDNDVLVQY KIMRETLIYL SHLDHDDTEK QMLKKLNKQL
0501: SGEEWAWNNL NTLCWAIGSI SGSMAEDQEN RFLVMVIRDL LNLCEITKGK DNKAVIASNI MYVVGQYPRF LRAHWKFLKT VVNKLFEFMH ETHPGVQDMA
0601: CDTFLKIVQK CKRKFVIVQV GEHEPFVSEL LSGLATTVQD LEPHQIHSFY ESVGNMIQAE SDPQKRDEYL QRLMALPNQK WAEIIGQARQ SVEFLKDPDV
0701: IRTVLNILQT NTSAATSLGT YFLSQISLIF LDMLNVYRMY SELVSTSITS GGPYASKTSF VKLLRSVKRE TLKLIETFLD KAEDQSHIGK QFVPPMMESV
0801: LCDYARNVPD ARESEVLSLF ATIINKYKGT MLDDVPNIFE AVFQCTLEMI TKNFEDYPEH RLKFFSLLRA IATFCFPALI KLSSQQLKLV MDSIIWAFRH
0901: TERNIAETGL NLLLEMLKNF QQSAFCNQFF RSYFIQIEQE IFAVLTDTFH KPGFKLHVLV LQHLFCLVES GSLTEPLWDA ATVPYPYPNN AAFVREYTIK
1001: LLSSSFPNMT AAEVTQFVNG LYESRNDPSE FKKNIRDFLV QSKEFSAQDN KDLYAEEAAA QREQERQRML SIPGLVAPNE IQDEMVDS
0101: IVTLSGNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHVKLSENLI
0201: FSFEFKLIHE LCLYVLSASQ RQDLIRSTLS ALHAYLSWIP LGYIFESPLL ETLLRFFPVP AYRNLTLQCL TEVAALNFGD FYNIQYVKMY TVFIGQLQTI
0301: LPPSTNIPEA YSNGSDEEQA FIQNLALFFT SFFKFHIRVL ESAPDIVALL LTGLEYLINI SYVDDTEVFK VCLDYWNSLV LELFDAHHNS DNPAANANLM
0401: GLQMSFIPGM VDGLGSQVMQ RRQLYSNPMS KLRGLMISRM AKPEEVLIVE DENGNIVRET MKDNDVLVQY KIMRETLIYL SHLDHDDTEK QMLKKLNKQL
0501: SGEEWAWNNL NTLCWAIGSI SGSMAEDQEN RFLVMVIRDL LNLCEITKGK DNKAVIASNI MYVVGQYPRF LRAHWKFLKT VVNKLFEFMH ETHPGVQDMA
0601: CDTFLKIVQK CKRKFVIVQV GEHEPFVSEL LSGLATTVQD LEPHQIHSFY ESVGNMIQAE SDPQKRDEYL QRLMALPNQK WAEIIGQARQ SVEFLKDPDV
0701: IRTVLNILQT NTSAATSLGT YFLSQISLIF LDMLNVYRMY SELVSTSITS GGPYASKTSF VKLLRSVKRE TLKLIETFLD KAEDQSHIGK QFVPPMMESV
0801: LCDYARNVPD ARESEVLSLF ATIINKYKGT MLDDVPNIFE AVFQCTLEMI TKNFEDYPEH RLKFFSLLRA IATFCFPALI KLSSQQLKLV MDSIIWAFRH
0901: TERNIAETGL NLLLEMLKNF QQSAFCNQFF RSYFIQIEQE IFAVLTDTFH KPGFKLHVLV LQHLFCLVES GSLTEPLWDA ATVPYPYPNN AAFVREYTIK
1001: LLSSSFPNMT AAEVTQFVNG LYESRNDPSE FKKNIRDFLV QSKEFSAQDN KDLYAEEAAA QREQERQRML SIPGLVAPNE IQDEMVDS
0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
Arabidopsis Description
XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.