Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra039199.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | Bra039199.1-P | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69407 | Canola | cytosol | 93.78 | 99.06 |
| Bra023593.1-P | Field mustard | cytosol | 91.64 | 94.76 |
| AT5G17020.1 | Thale cress | cytosol | 89.69 | 93.86 |
| Bra006382.1-P | Field mustard | cytosol | 89.87 | 93.44 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 83.29 | 87.08 |
| KRH24046 | Soybean | cytosol, nucleus | 81.96 | 85.61 |
| KRH29017 | Soybean | cytosol, nucleus | 81.78 | 85.42 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 81.51 | 85.3 |
| KRH27740 | Soybean | cytosol | 80.53 | 84.59 |
| KRH77701 | Soybean | cytosol | 79.91 | 83.94 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 79.82 | 83.53 |
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 4.0 | 83.33 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 78.04 | 82.06 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 77.16 | 81.73 |
| Bra021372.1-P | Field mustard | cytosol | 78.31 | 81.73 |
| EER90476 | Sorghum | cytosol | 77.78 | 81.7 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 77.51 | 81.57 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 79.82 | 81.12 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 75.2 | 80.73 |
| EER98405 | Sorghum | cytosol | 75.11 | 79.19 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 77.07 | 78.96 |
| Zm00001d034914_P037 | Maize | cytosol | 76.8 | 77.01 |
| Zm00001d012815_P022 | Maize | cytosol | 74.4 | 72.72 |
| Bra032016.1-P | Field mustard | cytosol | 65.6 | 71.17 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 11.38 | 65.31 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 1.96 | 50.0 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra008580 | EnsemblPlants:Bra008580.1 |
| EnsemblPlants:Bra008580.1-P | InterPro:CRM1_C_dom | InterPro:Exportin-1/Importin-b-like | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0008536 | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | UniProt:M4CWI3 |
| PFAM:PF03810 | PFAM:PF08389 | PFAM:PF08767 | PFscan:PS50166 | PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 |
| SMART:SM00913 | SMART:SM01102 | SUPFAM:SSF48371 | UniParc:UPI00025446AC | SEG:seg | : |
Description
AT5G17020 (E=0.0) XPO1A, ATCRM1, ATXPO1, XPO1 | XPO1A; protein binding / protein transporter/ receptor
Coordinates
chrA10:-:12902958..12910301
Molecular Weight (calculated)
129106.0 Da
IEP (calculated)
5.910
GRAVY (calculated)
-0.072
Length
1125 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAEKLRDLS PPIDVAVLDA TVAAFFVTGS KEEVVQFSLR FVFWTWNIEL EKRVGVSRTV SLYNASFGGK LNRASTAFQG IRRAAADQIL RDLQANPDMW
0101: LQVVHILQNT KSMDTKFFAL QVLEGVIKYR WNALPVEQRD GMKNYISEVI VQLSSNEASF RSERLYVNKL NVILVQIVKH DWPAKWTSFI PDLVAAAKTS
0201: ETICENCMII LKLLSEEVFD FSRGEMTQQK IKELKQSLNR HFKLIHELCL YVLSASQRQD LVRSTLSALH AYLSWIPLGY IFESPLLETL LKFFPVPAYR
0301: NLTLQCLTEV AALNFGDFYN AQYIKMYTIF IGQLQTILPP NTNIPEAYSN GSGEEEAFIQ NLALFFTSFF KFHIRVLEST PEFVTLLLAG LEYLINISYV
0401: DDTEVFKVCL DYWNLLVSEL FDAHHNSDNP AATVNMMGLQ MSFAPGMVDG LGSKVMQRRQ LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD
0501: NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV
0601: VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGET EPFVSELLSG LAATVQDLEP HQIHSFYESV GSMIQAESDP
0701: QKRDEYLQRL MALPNQKWAE IIGQARQSVE FLKDPDVIRT VLNILQTNTS AATSLGTFFL SQISLIFMDM LNVYRMYSEL VSTSITNGGP YASKTSFVKL
0801: LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK
0901: FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQHS AFCNQFFRSY FVQIEQEIFA VLTDTFHKPG FKLHVLVLQH
1001: LFCLAESGAL TEPLWDVATV PHPYPNNAVF VREYTIKLLS SSFPNMTAAE VTQFVNRLYE SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE
1101: QERQRMLSIP GLVAPNEIQD EMVDS
0101: LQVVHILQNT KSMDTKFFAL QVLEGVIKYR WNALPVEQRD GMKNYISEVI VQLSSNEASF RSERLYVNKL NVILVQIVKH DWPAKWTSFI PDLVAAAKTS
0201: ETICENCMII LKLLSEEVFD FSRGEMTQQK IKELKQSLNR HFKLIHELCL YVLSASQRQD LVRSTLSALH AYLSWIPLGY IFESPLLETL LKFFPVPAYR
0301: NLTLQCLTEV AALNFGDFYN AQYIKMYTIF IGQLQTILPP NTNIPEAYSN GSGEEEAFIQ NLALFFTSFF KFHIRVLEST PEFVTLLLAG LEYLINISYV
0401: DDTEVFKVCL DYWNLLVSEL FDAHHNSDNP AATVNMMGLQ MSFAPGMVDG LGSKVMQRRQ LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD
0501: NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV
0601: VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGET EPFVSELLSG LAATVQDLEP HQIHSFYESV GSMIQAESDP
0701: QKRDEYLQRL MALPNQKWAE IIGQARQSVE FLKDPDVIRT VLNILQTNTS AATSLGTFFL SQISLIFMDM LNVYRMYSEL VSTSITNGGP YASKTSFVKL
0801: LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK
0901: FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQHS AFCNQFFRSY FVQIEQEIFA VLTDTFHKPG FKLHVLVLQH
1001: LFCLAESGAL TEPLWDVATV PHPYPNNAVF VREYTIKLLS SSFPNMTAAE VTQFVNRLYE SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE
1101: QERQRMLSIP GLVAPNEIQD EMVDS
0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
Arabidopsis Description
XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.