Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | CDY46075 | AT2G23430.1 | 16766674 |
| AT5G17020.1 | CDY63966 | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16965 | Canola | cytosol | 98.87 | 97.86 |
| CDX70730 | Canola | cytosol | 95.4 | 95.4 |
| CDX78722 | Canola | cytosol | 95.31 | 95.31 |
| CDY02737 | Canola | cytosol | 95.96 | 94.98 |
| CDX85477 | Canola | cytosol | 95.59 | 94.61 |
| CDX70734 | Canola | cytosol | 78.97 | 94.6 |
| Bra008580.1-P | Field mustard | cytosol | 99.06 | 93.78 |
| AT5G17020.1 | Thale cress | cytosol | 93.9 | 93.02 |
| CDY69253 | Canola | cytosol, plasma membrane | 55.59 | 92.64 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 87.14 | 86.25 |
| KRH24046 | Soybean | cytosol, nucleus | 85.92 | 84.96 |
| KRH29017 | Soybean | cytosol, nucleus | 85.73 | 84.77 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 85.54 | 84.74 |
| KRH27740 | Soybean | cytosol | 84.51 | 84.03 |
| KRH77701 | Soybean | cytosol | 83.85 | 83.38 |
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 4.23 | 83.33 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 83.76 | 82.98 |
| CDY23464 | Canola | cytosol | 82.25 | 81.79 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 81.97 | 81.59 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 81.22 | 81.45 |
| EER90476 | Sorghum | cytosol | 81.5 | 81.05 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 81.31 | 81.01 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 83.47 | 80.31 |
| CDY49924 | Canola | cytosol | 82.82 | 80.25 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 78.87 | 80.15 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 81.13 | 78.69 |
| EER98405 | Sorghum | cytosol | 78.78 | 78.63 |
| Zm00001d034914_P037 | Maize | cytosol | 80.47 | 76.38 |
| Zm00001d012815_P022 | Maize | cytosol | 78.12 | 72.28 |
| CDY43150 | Canola | cytosol | 69.39 | 71.26 |
| CDY28738 | Canola | cytosol | 70.33 | 71.2 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 12.02 | 65.31 |
| CDY49926 | Canola | nucleus | 4.13 | 56.41 |
| CDY49925 | Canola | cytosol, peroxisome, plastid | 1.31 | 43.75 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 1.31 | 31.82 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | GO:A0A078BYI9 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDX69407 |
| ProteinID:CDX69407 | ProteinID:CDX69407.1 | InterPro:CRM1_C_dom | InterPro:Exportin-1/Importin-b-like | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00135375001 |
| InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF03810 | PFAM:PF08389 | PFAM:PF08767 |
| PFscan:PS50166 | PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 | SMART:SM00913 | SMART:SM01102 | SUPFAM:SSF48371 |
| UniParc:UPI0004EEBBEA | SEG:seg | : | : | : | : |
Description
BnaA10g17560D
Coordinates
chrLK031790:-:81106..88988
Molecular Weight (calculated)
122639.0 Da
IEP (calculated)
5.588
GRAVY (calculated)
-0.085
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAEKLRDLR QPIDVAVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TKSMDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NAQYIKMYTI FIGQLQTILP PNTNIPEAYS
0301: NGSGEEEAFI QNLALFFTSF FKFHIRVLES TPELVTLLLA GLEYLINISY VDDTEVFKVC LDYWNLLVSE LFDAHHNSDN PAATVNMMGL QMYIIMQRRQ
0401: LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL CWAIGSISGS
0501: MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGET
0601: EPFVSELLSG LATTVQDLEP HQIHSFYESV GSMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARQSVE FLKDPDVIRT VLNILQTNTS AATSLGTFFL
0701: SQISLIFMDM LNVYRMYSEL VSTSITNGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI
0801: INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQHS
0901: AFCNQFFRSY FVQIEQEIFA VLTDTFHKPG FKLHVLVLQH LFCLAESGAL TEPLWDVATV PHPYPNNAVF VREYTIKLLS SSFPNMTAAE VTQFVNRLYE
1001: SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE QERQRMLSIP GLVAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NAQYIKMYTI FIGQLQTILP PNTNIPEAYS
0301: NGSGEEEAFI QNLALFFTSF FKFHIRVLES TPELVTLLLA GLEYLINISY VDDTEVFKVC LDYWNLLVSE LFDAHHNSDN PAATVNMMGL QMYIIMQRRQ
0401: LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL CWAIGSISGS
0501: MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGET
0601: EPFVSELLSG LATTVQDLEP HQIHSFYESV GSMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARQSVE FLKDPDVIRT VLNILQTNTS AATSLGTFFL
0701: SQISLIFMDM LNVYRMYSEL VSTSITNGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI
0801: INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQHS
0901: AFCNQFFRSY FVQIEQEIFA VLTDTFHKPG FKLHVLVLQH LFCLAESGAL TEPLWDVATV PHPYPNNAVF VREYTIKLLS SSFPNMTAAE VTQFVNRLYE
1001: SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE QERQRMLSIP GLVAPNEIQD EMVDS
0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS
Arabidopsis Description
XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.