Factsheet for VIT_06s0009g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular

Predictor Summary:

nucleus 1
plastid 3
peroxisome 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02220.t01	Wine grape	cytosol	70.45	2.88
GSMUA_Achr1P25620_001	Banana	cytosol	61.36	2.44
GSMUA_Achr8P33200_001	Banana	cytosol	59.09	2.42
KRH29017	Soybean	cytosol, nucleus	59.09	2.41
KRH24046	Soybean	cytosol, nucleus	59.09	2.41
CDY69253	Canola	cytosol, plasma membrane	34.09	2.35
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	56.82	2.33
KRH77701	Soybean	cytosol	54.55	2.24
KRH27740	Soybean	cytosol	54.55	2.24
AT5G17020.1	Thale cress	cytosol	54.55	2.23
CDX85477	Canola	cytosol	54.55	2.23
CDY02737	Canola	cytosol	54.55	2.23
Bra023593.1-P	Field mustard	cytosol	54.55	2.21
CDY16965	Canola	cytosol	52.27	2.14
EER90476	Sorghum	cytosol	50.0	2.05
TraesCS5D01G568300.3	Wheat	cytosol	47.73	2.0
TraesCS4A01G317800.1	Wheat	cytosol, golgi	47.73	1.96
Os03t0858100-01	Rice	cytosol, plasma membrane	47.73	1.96
Zm00001d034914_P037	Maize	cytosol	50.0	1.96
Bra008580.1-P	Field mustard	cytosol	50.0	1.96
CDX70734	Canola	cytosol	36.36	1.8
EER98405	Sorghum	cytosol	43.18	1.78
Zm00001d012815_P022	Maize	cytosol	45.45	1.74
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	40.91	1.69
AT3G03110.1	Thale cress	cytosol	40.91	1.67
HORVU5Hr1G124770.13	Barley	cytosol	38.64	1.55
CDX78722	Canola	cytosol	36.36	1.5
CDX70730	Canola	cytosol	36.36	1.5
Bra006382.1-P	Field mustard	cytosol	36.36	1.48
CDX69407	Canola	cytosol	31.82	1.31
CDY23464	Canola	cytosol	27.27	1.12
Bra021372.1-P	Field mustard	cytosol	27.27	1.11
CDY49924	Canola	cytosol	27.27	1.09
CDY43150	Canola	cytosol	22.73	0.96
Bra032016.1-P	Field mustard	cytosol	22.73	0.96
CDY28738	Canola	cytosol	22.73	0.95
CDY49926	Canola	nucleus	0.0	0.0
VIT_06s0009g01690.t01	Wine grape	cytosol	0.0	0.0
VIT_14s0006g01850.t01	Wine grape	cytosol	0.0	0.0
CDY49925	Canola	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_06s0009g01700	EMBL:FN595504	EnsemblPlants:VIT_06s0009g01700.t01	EnsemblPlantsGene:VIT_06s0009g01700	ProteinID:CCB49144	ProteinID:CCB49144.1
SEG:seg	UniParc:UPI000210A0EF	UniProt:F6H9Z4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:-:13676525..13676797

Molecular Weight (calculated)

4801.1 Da

IEP (calculated)

10.993

GRAVY (calculated)

0.398

Length

44 amino acids

Sequence
(BLAST)

1: MAANTTGLQI PLIPGTVDGL GSQLLQRRRL YSGLMSQLRL LMIC

Best Arabidopsis Sequence Match ( AT5G17020.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS

Arabidopsis Description

XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.