CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23464	Canola	cytosol	62.5	1.87
CDY43150	Canola	cytosol	56.25	1.74
CDY49924	Canola	cytosol	59.38	1.73
CDY28738	Canola	cytosol	53.12	1.62
CDX70734	Canola	cytosol	43.75	1.57
EER98405	Sorghum	cytosol	50.0	1.5
GSMUA_Achr8P33200_001	Banana	cytosol	50.0	1.49
VIT_16s0039g02220.t01	Wine grape	cytosol	46.88	1.39
CDX85477	Canola	cytosol	46.88	1.39
CDY02737	Canola	cytosol	46.88	1.39
TraesCS5D01G568300.3	Wheat	cytosol	43.75	1.34
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	43.75	1.32
CDX69407	Canola	cytosol	43.75	1.31
CDX78722	Canola	cytosol	43.75	1.31
Os03t0858100-01	Rice	cytosol, plasma membrane	43.75	1.31
EER90476	Sorghum	cytosol	43.75	1.31
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	43.75	1.3
HORVU5Hr1G124770.13	Barley	cytosol	43.75	1.28
GSMUA_Achr1P25620_001	Banana	cytosol	43.75	1.26
Zm00001d034914_P037	Maize	cytosol	43.75	1.25
CDX70730	Canola	cytosol	40.62	1.22
TraesCS4A01G317800.1	Wheat	cytosol, golgi	40.62	1.22
KRH77701	Soybean	cytosol	40.62	1.21
KRH27740	Soybean	cytosol	40.62	1.21
AT3G03110.1	Thale cress	cytosol	40.62	1.21
CDY16965	Canola	cytosol	40.62	1.21
Zm00001d012815_P022	Maize	cytosol	37.5	1.04
KRH29017	Soybean	cytosol, nucleus	34.38	1.02
KRH24046	Soybean	cytosol, nucleus	34.38	1.02
VIT_14s0006g01850.t01	Wine grape	cytosol	3.12	0.51
CDY69253	Canola	cytosol, plasma membrane	9.38	0.47
CDY49926	Canola	nucleus	0.0	0.0
VIT_06s0009g01690.t01	Wine grape	cytosol	0.0	0.0
VIT_06s0009g01700.t01	Wine grape	extracellular, peroxisome, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY49925	EnsemblPlantsGene:GSBRNA2T00094091001	ProteinID:CDY49925	ProteinID:CDY49925.1	UniParc:UPI0004EE0F82	UniProt:A0A078IG85
MapMan:35.2	:	:	:	:	:

Description

BnaCnng18350DBnaCnng18350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG85]

Coordinates

chrLK032869:+:26715..26813

Molecular Weight (calculated)

3741.6 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.197

Length

32 amino acids

Sequence
(BLAST)

1: MDNPRVFKLM ICKSLTETLW DASTVLQQFP NN

Best Arabidopsis Sequence Match ( AT3G03110.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS

Arabidopsis Description

XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.