CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70734	Canola	cytosol	57.69	5.06
CDY23464	Canola	cytosol	65.38	4.76
CDY49924	Canola	cytosol	64.1	4.55
AT3G03110.1	Thale cress	cytosol	60.26	4.37
CDX70730	Canola	cytosol	57.69	4.23
CDX78722	Canola	cytosol	57.69	4.23
CDX85477	Canola	cytosol	57.69	4.18
CDY02737	Canola	cytosol	57.69	4.18
VIT_16s0039g02220.t01	Wine grape	cytosol	57.69	4.18
CDX69407	Canola	cytosol	56.41	4.13
KRH27740	Soybean	cytosol	56.41	4.11
CDY16965	Canola	cytosol	56.41	4.09
KRH77701	Soybean	cytosol	55.13	4.01
KRH29017	Soybean	cytosol, nucleus	53.85	3.9
KRH24046	Soybean	cytosol, nucleus	53.85	3.9
GSMUA_Achr1P25620_001	Banana	cytosol	55.13	3.88
TraesCS5D01G568300.3	Wheat	cytosol	51.28	3.82
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	52.56	3.81
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	51.28	3.77
TraesCS4A01G317800.1	Wheat	cytosol, golgi	51.28	3.74
Os03t0858100-01	Rice	cytosol, plasma membrane	51.28	3.74
EER90476	Sorghum	cytosol	51.28	3.73
HORVU5Hr1G124770.13	Barley	cytosol	51.28	3.64
GSMUA_Achr8P33200_001	Banana	cytosol	50.0	3.63
EER98405	Sorghum	cytosol	48.72	3.56
Zm00001d034914_P037	Maize	cytosol	50.0	3.48
CDY43150	Canola	cytosol	38.46	2.89
CDY28738	Canola	cytosol	37.18	2.76
Zm00001d012815_P022	Maize	cytosol	33.33	2.26
CDY69253	Canola	cytosol, plasma membrane	1.28	0.16
CDY49925	Canola	cytosol, peroxisome, plastid	0.0	0.0
VIT_06s0009g01690.t01	Wine grape	cytosol	0.0	0.0
VIT_06s0009g01700.t01	Wine grape	extracellular, peroxisome, plastid	0.0	0.0
VIT_14s0006g01850.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY49926	EnsemblPlantsGene:GSBRNA2T00094092001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:CRM1_C_dom	InterPro:IPR011989	PFAM:PF08767	ProteinID:CDY49926	ProteinID:CDY49926.1
SUPFAM:SSF48371	UniParc:UPI0004EDCDA9	UniProt:A0A078IIY4	MapMan:35.1	:	:

Description

BnaCnng18360DBnaCnng18360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIY4]

Coordinates

chrLK032869:+:26869..27277

Molecular Weight (calculated)

9136.4 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.981

Length

78 amino acids

Sequence
(BLAST)

1: MTTSVVTQFV NGLYESRSDI ARFKDNIRDF LVQSKEFSAQ DNKDLYAEEA AAQLRERYTE DAFDSWSYSS KRDSRRHG

Best Arabidopsis Sequence Match ( AT3G03110.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS

Arabidopsis Description

XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.