Factsheet for VIT_06s0009g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69253	Canola	cytosol, plasma membrane	81.48	6.89
CDX70734	Canola	cytosol	81.48	4.95
VIT_16s0039g02220.t01	Wine grape	cytosol	94.44	4.74
Os03t0858100-01	Rice	cytosol, plasma membrane	88.89	4.49
TraesCS5D01G568300.3	Wheat	cytosol	87.04	4.48
KRH77701	Soybean	cytosol	88.89	4.48
KRH27740	Soybean	cytosol	88.89	4.48
EER90476	Sorghum	cytosol	88.89	4.48
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	87.04	4.43
TraesCS4A01G317800.1	Wheat	cytosol, golgi	87.04	4.4
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	87.04	4.37
GSMUA_Achr8P33200_001	Banana	cytosol	87.04	4.37
AT3G03110.1	Thale cress	cytosol	87.04	4.37
KRH29017	Soybean	cytosol, nucleus	87.04	4.36
KRH24046	Soybean	cytosol, nucleus	87.04	4.36
EER98405	Sorghum	cytosol	85.19	4.31
HORVU5Hr1G124770.13	Barley	cytosol	87.04	4.28
Zm00001d034914_P037	Maize	cytosol	88.89	4.28
CDX85477	Canola	cytosol	85.19	4.28
CDY02737	Canola	cytosol	85.19	4.28
Bra023593.1-P	Field mustard	cytosol	85.19	4.23
CDX69407	Canola	cytosol	83.33	4.23
AT5G17020.1	Thale cress	cytosol	83.33	4.19
CDY16965	Canola	cytosol	83.33	4.18
Zm00001d012815_P022	Maize	cytosol	88.89	4.17
GSMUA_Achr1P25620_001	Banana	cytosol	85.19	4.16
CDX70730	Canola	cytosol	81.48	4.13
CDY23464	Canola	cytosol	81.48	4.11
CDY49924	Canola	cytosol	83.33	4.09
CDX78722	Canola	cytosol	79.63	4.04
Bra008580.1-P	Field mustard	cytosol	83.33	4.0
Bra021372.1-P	Field mustard	cytosol	79.63	3.99
Bra006382.1-P	Field mustard	cytosol	79.63	3.97
Bra032016.1-P	Field mustard	cytosol	74.07	3.86
CDY43150	Canola	cytosol	74.07	3.86
CDY28738	Canola	cytosol	64.81	3.33
CDY49925	Canola	cytosol, peroxisome, plastid	0.0	0.0
VIT_06s0009g01700.t01	Wine grape	extracellular, peroxisome, plastid	0.0	0.0
VIT_14s0006g01850.t01	Wine grape	cytosol	0.0	0.0
CDY49926	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	ProteinID:CCB49145	ProteinID:CCB49145.1	ncoils:Coil
UniProt:F6H9Z5	EMBL:FN595504	GO:GO:0000055	GO:GO:0000056	GO:GO:0003674	GO:GO:0005049
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0046825	InterPro:IPR011989	PANTHER:PTHR11223	PANTHER:PTHR11223:SF2
UniParc:UPI000210A0F0	ArrayExpress:VIT_06s0009g01690	EnsemblPlantsGene:VIT_06s0009g01690	EnsemblPlants:VIT_06s0009g01690.t01	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:13676247..13676524

Molecular Weight (calculated)

6622.0 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.769

Length

54 amino acids

Sequence
(BLAST)

1: MKDNDVLVQY KIMRQILIYL SHLDHEDTEK QMLKKLSKQL KDEDWTWNNL NTLC

Best Arabidopsis Sequence Match ( AT3G03110.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS

Arabidopsis Description

XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.