Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | CDY46075 | AT2G23430.1 | 16766674 |
| AT5G17020.1 | CDY63966 | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69407 | Canola | cytosol | 97.86 | 98.87 |
| CDY02737 | Canola | cytosol | 96.1 | 96.1 |
| CDX85477 | Canola | cytosol | 95.91 | 95.91 |
| CDX70730 | Canola | cytosol | 94.24 | 95.21 |
| CDX78722 | Canola | cytosol | 94.14 | 95.12 |
| CDX70734 | Canola | cytosol | 77.97 | 94.38 |
| AT5G17020.1 | Thale cress | cytosol | 93.87 | 93.95 |
| CDY69253 | Canola | cytosol, plasma membrane | 54.93 | 92.49 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 86.99 | 86.99 |
| KRH24046 | Soybean | cytosol, nucleus | 85.5 | 85.42 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 85.22 | 85.3 |
| KRH29017 | Soybean | cytosol, nucleus | 85.32 | 85.24 |
| KRH27740 | Soybean | cytosol | 84.01 | 84.41 |
| KRH77701 | Soybean | cytosol | 83.36 | 83.75 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 83.55 | 83.63 |
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 4.18 | 83.33 |
| CDY23464 | Canola | cytosol | 81.69 | 82.07 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 81.51 | 81.96 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 80.58 | 81.64 |
| EER90476 | Sorghum | cytosol | 81.23 | 81.61 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 80.86 | 81.38 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 83.36 | 81.03 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 78.44 | 80.53 |
| CDY49924 | Canola | cytosol | 82.25 | 80.53 |
| EER98405 | Sorghum | cytosol | 78.44 | 79.1 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 80.48 | 78.87 |
| Zm00001d034914_P037 | Maize | cytosol | 80.2 | 76.92 |
| Zm00001d012815_P022 | Maize | cytosol | 77.7 | 72.63 |
| CDY43150 | Canola | cytosol | 68.49 | 71.07 |
| CDY28738 | Canola | cytosol | 69.42 | 71.01 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 11.9 | 65.31 |
| CDY49926 | Canola | nucleus | 4.09 | 56.41 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 2.14 | 52.27 |
| CDY49925 | Canola | cytosol, peroxisome, plastid | 1.21 | 40.62 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | GO:A0A078FR54 | UniProt:A0A078FR54 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDY16965 | ProteinID:CDY16965 | ProteinID:CDY16965.1 | InterPro:CRM1_C_dom | InterPro:Exportin-1/Importin-b-like | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00094896001 | InterPro:IPR001494 |
| InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF03810 | PFAM:PF08389 | PFAM:PF08767 | PFscan:PS50166 |
| PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 | SMART:SM00913 | SMART:SM01102 | SUPFAM:SSF48371 | UniParc:UPI0004EE838F |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g40920DBnaC09g40920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR54]
Coordinates
chrLK032068:-:597874..606154
Molecular Weight (calculated)
123639.0 Da
IEP (calculated)
5.382
GRAVY (calculated)
-0.090
Length
1076 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGEKLRDLS QPIDVAVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TKSMDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NAQYIKMYTI FIGQLQTILP PNTNIPEAYS
0301: NGSGEEEAFI QNLALFFTSF FKFHIRVLES TPEFVTLLLA GLEYLINISY VDDTEVFKVC LDYWNLLVSE LFDAHHNSDN PAATVNLMGF QMSFAPGMVD
0401: GLGSQVMQRR QLYSNPMSKL RGLMINRMAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHDDTEKQM LRKLNKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMAEDQENRF LVMVIRDLLN LCEITKGKDN KAVIASNIMY VVGQYPRFLR AHWKFLKTVV NKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE TEPFVSELLS GLATTVQDLE PHQIHSFYES VGSMIQAESD PQKRDEYLQR LMALPNQKWA EIIGQARQSV EFLKDPDVIR TVLNILQTNT
0701: SAATSLGTFF LSQISLIFMD MLNVYRMYSE LVSTSITNGG PYASKTSFVK LLRSVKRETL KLIETFLDKA EDQPHIGKQF VSPMMEYVLA DYARNVPDAR
0801: ESEVLSLFAT IINKYKETML DDVPNIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFPALIKL SSQQLKLVMD SIIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQH SAFCNQFFRS YFVQIEQEIF AVLTDTFHKP GFKLHVLVLQ HLFCLAESGA LTEPMWDVAT VPHPYPNNAV FVREYTIKLL SSSFPNMTAA
1001: EVTQFVNRLY ESRNDPSEFK KNIRDFLVQS KEFSAQDNKD LYAEEAAAQR EQERQRMLSI PGLVAPNEIQ DEMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN RHFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NAQYIKMYTI FIGQLQTILP PNTNIPEAYS
0301: NGSGEEEAFI QNLALFFTSF FKFHIRVLES TPEFVTLLLA GLEYLINISY VDDTEVFKVC LDYWNLLVSE LFDAHHNSDN PAATVNLMGF QMSFAPGMVD
0401: GLGSQVMQRR QLYSNPMSKL RGLMINRMAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHDDTEKQM LRKLNKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMAEDQENRF LVMVIRDLLN LCEITKGKDN KAVIASNIMY VVGQYPRFLR AHWKFLKTVV NKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE TEPFVSELLS GLATTVQDLE PHQIHSFYES VGSMIQAESD PQKRDEYLQR LMALPNQKWA EIIGQARQSV EFLKDPDVIR TVLNILQTNT
0701: SAATSLGTFF LSQISLIFMD MLNVYRMYSE LVSTSITNGG PYASKTSFVK LLRSVKRETL KLIETFLDKA EDQPHIGKQF VSPMMEYVLA DYARNVPDAR
0801: ESEVLSLFAT IINKYKETML DDVPNIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFPALIKL SSQQLKLVMD SIIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQH SAFCNQFFRS YFVQIEQEIF AVLTDTFHKP GFKLHVLVLQ HLFCLAESGA LTEPMWDVAT VPHPYPNNAV FVREYTIKLL SSSFPNMTAA
1001: EVTQFVNRLY ESRNDPSEFK KNIRDFLVQS KEFSAQDNKD LYAEEAAAQR EQERQRMLSI PGLVAPNEIQ DEMVDS
0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
Arabidopsis Description
XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.