CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29017	Soybean	cytosol, nucleus	98.42	98.42
KRH27740	Soybean	cytosol	92.39	92.9
KRH77701	Soybean	cytosol	92.11	92.62
VIT_16s0039g02220.t01	Wine grape	cytosol	91.74	91.82
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	87.56	87.72
VIT_06s0009g01690.t01	Wine grape	cytosol	4.36	87.04
AT5G17020.1	Thale cress	cytosol	86.82	86.98
CDY02737	Canola	cytosol	85.98	86.06
GSMUA_Achr8P33200_001	Banana	cytosol	85.89	86.05
CDX69407	Canola	cytosol	84.96	85.92
CDX70730	Canola	cytosol	84.96	85.92
CDX85477	Canola	cytosol	85.61	85.69
CDX78722	Canola	cytosol	84.68	85.63
CDY16965	Canola	cytosol	85.42	85.5
EER90476	Sorghum	cytosol	84.59	85.06
Os03t0858100-01	Rice	cytosol, plasma membrane	84.49	85.05
CDX70734	Canola	cytosol	70.19	85.04
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	83.47	84.65
Bra023593.1-P	Field mustard	cytosol	85.52	84.65
TraesCS4A01G317800.1	Wheat	cytosol, golgi	83.94	84.56
CDY69253	Canola	cytosol, plasma membrane	49.95	84.19
Bra006382.1-P	Field mustard	cytosol	84.49	84.1
GSMUA_Achr1P25620_001	Banana	cytosol	86.26	83.92
TraesCS5D01G568300.3	Wheat	cytosol	81.34	83.59
AT3G03110.1	Thale cress	cytosol	82.64	82.71
Bra008580.1-P	Field mustard	cytosol	85.61	81.96
EER98405	Sorghum	cytosol	80.97	81.72
HORVU5Hr1G124770.13	Barley	cytosol	83.1	81.51
Zm00001d034914_P037	Maize	cytosol	83.66	80.3
CDY23464	Canola	cytosol	79.2	79.65
Bra021372.1-P	Field mustard	cytosol	79.29	79.22
CDY49924	Canola	cytosol	79.57	77.98
Zm00001d012815_P022	Maize	cytosol	80.78	75.59
Bra032016.1-P	Field mustard	cytosol	67.5	70.11
CDY43150	Canola	cytosol	67.41	70.01
CDY28738	Canola	cytosol	68.06	69.68
VIT_14s0006g01850.t01	Wine grape	cytosol	12.44	68.37
VIT_06s0009g01700.t01	Wine grape	extracellular, peroxisome, plastid	2.41	59.09
CDY49926	Canola	nucleus	3.9	53.85
CDY49925	Canola	cytosol, peroxisome, plastid	1.02	34.38

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100813443	MapMan:23.5.1.2.8	EMBL:ACUP02007166	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:CRM1_C_dom	InterPro:Exportin-1/Importin-b-like	EnsemblPlantsGene:GLYMA_12G018500	GO:GO:0000055	GO:GO:0000056	GO:GO:0003674
GO:GO:0005049	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008536	GO:GO:0046825	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	UniProt:K7LSJ2
EnsemblPlants:KRH24046	ProteinID:KRH24046	ProteinID:KRH24046.1	ProteinID:KRH24047.1	ProteinID:KRH24048.1	PFAM:PF03810
PFAM:PF08389	PFAM:PF08767	PFscan:PS50166	PANTHER:PTHR11223	PANTHER:PTHR11223:SF2	SMART:SM00913
SMART:SM01102	SUPFAM:SSF48371	UniParc:UPI000233D2FF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:1299362..1310599

Molecular Weight (calculated)

124001.0 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.084

Length

1077 amino acids

Sequence
(BLAST)

0001: MAAEKLRDLS QPIDVPLLDA TVAAFYGTGS KDERNAADQI LRDLQNNPDM WLQVMHILQN TQNLNTKFFA LQVLEGVIKY RWNALPVEQR DGMKNFISDV
0101: IVQLSSNEAS FRAERLYVNK LNIILVQILK HEWPARWRSF IPDLVSAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRT ELIRATLSTL HAFLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALQFVNYY DVQYVKMYNI FMVQLQGILP PTTNIPEAYG
0301: QGSSEEQAFI QNLALFFTSF YKFHIRILES TQENIAALLV GLEYVINISY VDDTEVFKVC LDYWNSLVSE LFEPHRSLDN PAAAATMMGL QVPAMLPGMV
0401: DGHGSQLLQR RQLYAGPMSK LRMLMICRMA KPEEVLIVED ENGNIVRETL KDNDVLVQYK IMRETLIYLS HLDHDDTEKQ MLRKLSKQLS GEDWTWNNLN
0501: TLCWAIGSIS GSMMEEQENR FLVMVIRDLL NLCEITKGKD NKAVIASNIM YVVGQYPRFL RAHWKFLKTV VNKLFEFMHE THPGVQDMAC DTFLKIVQKC
0601: KRKFVITQVG ENEPFVSELL TGLPITIADL EPHQIHSFYE SVGHMIQAES DAQKRDEYLQ RLMELPNQKW MEIIGQAHQN VDFLKDQDVI RTVLNIMQTN
0701: TSVATSLGTY FLPQISLIFL DMLNVYRMYS ELISKSITEG GPFASRTSYV KLLRSVKRET LKLIETFLDK AEDQPQIGKQ FVPPMMDPVL GDYSRNVPDA
0801: RESEVLSLFA TIVNKYKAAM IEDVPRIFEA VFQCTLEMIT KNFEDYPEHR LKFFSLLRAI ATHCFPALIC LSSQQLKLVM DSIIWAFRHT ERNIAETGLN
0901: LLLEMLKKFQ GSEFCNQFYR TYFLTIEQEI FAVLTDTFHK PGFKLHVLVL QHLFCLLETG ALTEPLWDVA TSQYSYSSNA VFVREFTIKL LSTSFPNMTS
1001: AEVTQFVNGL FESTNDLSTF KNHIRDFLIQ SKEFSAQDNK DLYAEEAAAQ RERERQRMLS IPGLIAPSEL QDEMVDS

Best Arabidopsis Sequence Match ( AT5G17020.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS

Arabidopsis Description

XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.