Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | CDY46075 | AT2G23430.1 | 16766674 |
| AT5G17020.1 | CDY63966 | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70734 | Canola | cytosol | 82.91 | 99.33 |
| Bra006382.1-P | Field mustard | cytosol | 99.81 | 98.24 |
| CDX70730 | Canola | cytosol | 98.22 | 98.22 |
| CDY69253 | Canola | cytosol, plasma membrane | 58.22 | 97.03 |
| CDY02737 | Canola | cytosol | 96.34 | 95.35 |
| CDX69407 | Canola | cytosol | 95.31 | 95.31 |
| CDX85477 | Canola | cytosol | 96.06 | 95.07 |
| CDY16965 | Canola | cytosol | 95.12 | 94.14 |
| AT5G17020.1 | Thale cress | cytosol | 94.46 | 93.58 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 87.14 | 86.25 |
| KRH24046 | Soybean | cytosol, nucleus | 85.63 | 84.68 |
| KRH29017 | Soybean | cytosol, nucleus | 85.45 | 84.49 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 84.88 | 84.09 |
| KRH27740 | Soybean | cytosol | 83.94 | 83.47 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 83.94 | 83.16 |
| KRH77701 | Soybean | cytosol | 83.29 | 82.82 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 81.41 | 81.64 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 81.97 | 81.59 |
| CDY23464 | Canola | cytosol | 81.78 | 81.33 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 81.5 | 81.2 |
| EER90476 | Sorghum | cytosol | 81.31 | 80.86 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 83.85 | 80.67 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 79.06 | 80.34 |
| CDY49924 | Canola | cytosol | 82.35 | 79.8 |
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 4.04 | 79.63 |
| EER98405 | Sorghum | cytosol | 79.06 | 78.91 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 81.22 | 78.78 |
| Zm00001d034914_P037 | Maize | cytosol | 80.28 | 76.2 |
| Zm00001d012815_P022 | Maize | cytosol | 78.03 | 72.2 |
| CDY28738 | Canola | cytosol | 69.58 | 70.44 |
| CDY43150 | Canola | cytosol | 68.54 | 70.4 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 11.55 | 62.76 |
| CDY49926 | Canola | nucleus | 4.23 | 57.69 |
| CDY49925 | Canola | cytosol, peroxisome, plastid | 1.31 | 43.75 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 1.5 | 36.36 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | GO:A0A078CPQ9 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDX78722 |
| ProteinID:CDX78722 | ProteinID:CDX78722.1 | InterPro:CRM1_C_dom | InterPro:Exportin-1/Importin-b-like | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00130150001 |
| InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF03810 | PFAM:PF08389 | PFAM:PF08767 |
| PFscan:PS50166 | PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 | SMART:SM00913 | SMART:SM01102 | SUPFAM:SSF48371 |
| UniParc:UPI0004EDF6CF | SEG:seg | : | : | : | : |
Description
BnaA03g06340D
Coordinates
chrLK031815:+:1936740..1944786
Molecular Weight (calculated)
122312.0 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.078
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAEKLRDLS QPIDVGVLDA TVSAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TKSMDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NVQYVKMYTM FIGQLQTILP PSTNIPEAYS
0301: SGSDEEQAFI QNLALFFTSF FKFHIRVLES APDTVSLLLT GLEYLINISY VDDTEVFKVC LDYWNTLVLE LFDAHHNSDN PAASINLMGL QMAQVLQRRQ
0401: LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETLKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLTKQLSGE EWAWNTLNTL CWAIGSISGS
0501: MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGER
0601: EPFVSELLSG LASTVQDLEP HQIHSFYESV GNMIHAESDP LKRDEYLRRL MELPNEKWAE IIGQARHSVE VLKDPVVIRT VLNILQTNTS AATSLGTDFL
0701: SQISLIFLDM LNVYRMYSEL VSTSITDGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI
0801: INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQQS
0901: AFCNQFFRSY FIQIEQEIFA VLTDTFHKPG FKLHVLVLQH LFCLVESGAL TEPLWDTATV PYPYPNNAAF VREYTIKLLS SSFPNMTAAE VTQFVNGLYE
1001: SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE QERQRMLSIP GLVAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMI ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRSTLSAL HAYLSWIPLG YIFESPLLET LLKFFPVPAY RNLTLQCLTE VAALNFGDFY NVQYVKMYTM FIGQLQTILP PSTNIPEAYS
0301: SGSDEEQAFI QNLALFFTSF FKFHIRVLES APDTVSLLLT GLEYLINISY VDDTEVFKVC LDYWNTLVLE LFDAHHNSDN PAASINLMGL QMAQVLQRRQ
0401: LYSNPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETLKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLTKQLSGE EWAWNTLNTL CWAIGSISGS
0501: MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGER
0601: EPFVSELLSG LASTVQDLEP HQIHSFYESV GNMIHAESDP LKRDEYLRRL MELPNEKWAE IIGQARHSVE VLKDPVVIRT VLNILQTNTS AATSLGTDFL
0701: SQISLIFLDM LNVYRMYSEL VSTSITDGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI
0801: INKYKATMLD DVPNIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQQS
0901: AFCNQFFRSY FIQIEQEIFA VLTDTFHKPG FKLHVLVLQH LFCLVESGAL TEPLWDTATV PYPYPNNAAF VREYTIKLLS SSFPNMTAAE VTQFVNGLYE
1001: SRNDPSEFKK NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE QERQRMLSIP GLVAPNEIQD EMVDS
0001: MAAEKLRDLS QPIDVGVLDA TVAAFFVTGS KEERAAADQI LRDLQANPDM WLQVVHILQN TNSLDTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISEV
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
0101: IVQLSSNEAS FRSERLYVNK LNVILVQIVK HDWPAKWTSF IPDLVAAAKT SETICENCMA ILKLLSEEVF DFSRGEMTQQ KIKELKQSLN SEFKLIHELC
0201: LYVLSASQRQ DLIRATLSAL HAYLSWIPLG YIFESTLLET LLKFFPVPAY RNLTIQCLTE VAALNFGDFY NVQYVKMYTI FIGQLRIILP PSTKIPEAYS
0301: SGSGEEQAFI QNLALFFTSF FKFHIRVLES TPEVVSLLLA GLEYLINISY VDDTEVFKVC LDYWNSLVLE LFDAHHNSDN PAVSASLMGL QPFLPGMVDG
0401: LGSQVMQRRQ LYSHPMSKLR GLMINRMAKP EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLNKQLSGE EWAWNNLNTL
0501: CWAIGSISGS MAEDQENRFL VMVIRDLLNL CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR
0601: KFVIVQVGEN EPFVSELLTG LATTVQDLEP HQIHSFYESV GNMIQAESDP QKRDEYLQRL MALPNQKWAE IIGQARHSVE FLKDQVVIRT VLNILQTNTS
0701: AATSLGTYFL SQISLIFLDM LNVYRMYSEL VSTNITEGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV PPMMESVLGD YARNVPDARE
0801: SEVLSLFATI INKYKATMLD DVPHIFEAVF QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SPQLKLVMDS IIWAFRHTER NIAETGLNLL
0901: LEMLKNFQQS EFCNQFYRSY FMQIEQEIFA VLTDTFHKPG FKLHVLVLQQ LFCLPESGAL TEPLWDATTV PYPYPDNVAF VREYTIKLLS SSFPNMTAAE
1001: VTQFVNGLYE SRNDPSGFKN NIRDFLVQSK EFSAQDNKDL YAEEAAAQRE RERQRMLSIP GLIAPNEIQD EMVDS
Arabidopsis Description
XPO1XPO1A [Source:UniProtKB/TrEMBL;Acc:A0A178U9W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.